Variant report

Variant	rs2568076
Chromosome Location	chr11:8948615-8948616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8940620..8943003-chr11:8946457..8949397,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10743099	0.88[JPT][hapmap]
rs11042113	1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs12574321	1.00[AMR][1000 genomes]
rs1432117	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1432118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2116513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2163627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2436176	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs2568022	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2568040	0.93[ASN][1000 genomes]
rs2568067	0.93[ASN][1000 genomes]
rs2568073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2568084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2653572	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2653599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2653617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[ASN][1000 genomes]
rs2742481	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2742490	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2742492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2742506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2742509	0.95[ASN][1000 genomes]
rs2742522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4910179	0.93[ASN][1000 genomes]
rs56947653	1.00[ASN][1000 genomes]
rs7108116	0.88[JPT][hapmap]
rs7125458	0.86[JPT][hapmap]
rs891787	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8934000-8952200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:8934200-8948800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:8936400-8951200	Weak transcription	Right Atrium	heart
4	chr11:8936600-8949000	Strong transcription	Fetal Stomach	stomach
5	chr11:8936600-8954000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:8939400-8948800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:8940200-8949200	Weak transcription	Primary B cells from cord blood	blood
8	chr11:8940800-8949200	Weak transcription	Fetal Heart	heart
9	chr11:8941200-8953400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:8941200-8956200	Weak transcription	K562	blood
11	chr11:8942000-8948800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:8942400-8950200	Weak transcription	Esophagus	oesophagus
13	chr11:8942400-8959000	Weak transcription	Fetal Kidney	kidney
14	chr11:8942600-8948800	Weak transcription	Colonic Mucosa	Colon
15	chr11:8943200-8950000	Weak transcription	GM12878-XiMat	blood
16	chr11:8943200-8950800	Weak transcription	Primary T cells from cord blood	blood
17	chr11:8943800-8969200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:8944000-8952200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:8944200-8956400	Weak transcription	HUVEC	blood vessel
20	chr11:8944600-8950000	Weak transcription	HMEC	breast
21	chr11:8944600-8950000	Weak transcription	HSMMtube	muscle
22	chr11:8944600-8950800	Weak transcription	HepG2	liver
23	chr11:8944600-8985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:8944800-8949000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:8944800-8949200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:8944800-8949600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:8944800-8950200	Weak transcription	Placenta	Placenta
28	chr11:8944800-8954000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:8944800-8956400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:8945000-8949000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:8945000-8949800	Weak transcription	Pancreas	Pancrea
32	chr11:8945000-8950200	Weak transcription	Right Ventricle	heart
33	chr11:8945000-8950400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:8945000-8950400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:8945000-8950400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:8945000-8950400	Weak transcription	HSMM	muscle
37	chr11:8945000-8950400	Weak transcription	Osteobl	bone
38	chr11:8945000-8950800	Weak transcription	Brain Substantia Nigra	brain
39	chr11:8945000-8950800	Weak transcription	Ovary	ovary
40	chr11:8945000-8951000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:8945000-8951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:8945000-8953600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:8945000-8953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:8945000-8954000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:8945000-8954000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:8945000-8955000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:8945000-8956200	Weak transcription	NH-A	brain
48	chr11:8945200-8954000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:8945200-8954400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:8945200-8956200	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links