Variant report

Variant	rs2116513
Chromosome Location	chr11:8909368-8909369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10743099	0.88[JPT][hapmap]
rs11042113	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12275492	1.00[TSI][hapmap]
rs1432117	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs1432118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16905816	1.00[TSI][hapmap]
rs16905828	1.00[TSI][hapmap]
rs16905855	1.00[TSI][hapmap]
rs16905887	1.00[TSI][hapmap]
rs16906027	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2163627	0.86[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2292047	1.00[MEX][hapmap]
rs2436176	0.95[ASN][1000 genomes]
rs2455604	1.00[MEX][hapmap]
rs2568040	1.00[ASN][1000 genomes]
rs2568048	0.81[ASN][1000 genomes]
rs2568067	1.00[ASN][1000 genomes]
rs2568073	0.88[ASN][1000 genomes]
rs2568076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2653572	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2653599	0.93[ASN][1000 genomes]
rs2653617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2742492	0.84[ASN][1000 genomes]
rs2742506	0.88[ASN][1000 genomes]
rs2742509	0.88[ASN][1000 genomes]
rs2742522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2742540	0.86[YRI][hapmap]
rs4061641	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4910179	0.86[ASN][1000 genomes]
rs56947653	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58094352	1.00[EUR][1000 genomes]
rs58735631	1.00[EUR][1000 genomes]
rs60631733	1.00[EUR][1000 genomes]
rs60719227	1.00[EUR][1000 genomes]
rs7108116	0.88[JPT][hapmap]
rs7108310	1.00[EUR][1000 genomes]
rs7125458	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs7127574	1.00[MEX][hapmap]
rs73410050	1.00[EUR][1000 genomes]
rs7938235	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8908200-8909400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:8909000-8910000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links