Variant report

Variant	rs16905887
Chromosome Location	chr11:8809202-8809203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16905816	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16905828	1.00[TSI][hapmap]
rs16905855	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16906027	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2116513	1.00[TSI][hapmap]
rs60812444	1.00[EUR][1000 genomes]
rs74053199	1.00[EUR][1000 genomes]
rs7936336	1.00[EUR][1000 genomes]
rs7937844	1.00[EUR][1000 genomes]
rs7938235	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7949147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8791400-8810400	Weak transcription	Hela-S3	cervix
2	chr11:8795000-8809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:8798200-8810000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:8800600-8811400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8801000-8815600	Weak transcription	NHDF-Ad	bronchial
10	chr11:8801600-8820000	Weak transcription	HSMMtube	muscle
11	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus
12	chr11:8801800-8814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:8802000-8816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:8802200-8819200	Weak transcription	NH-A	brain
15	chr11:8802400-8810600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:8802800-8816000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:8803000-8815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:8803000-8820600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:8804400-8811000	Enhancers	Colon Smooth Muscle	Colon
20	chr11:8805800-8811400	Weak transcription	Aorta	Aorta
21	chr11:8806000-8810800	Enhancers	Right Ventricle	heart
22	chr11:8806400-8810800	Enhancers	Fetal Heart	heart
23	chr11:8806600-8809400	Enhancers	Left Ventricle	heart
24	chr11:8806800-8809400	Enhancers	Pancreas	Pancrea
25	chr11:8807000-8811800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:8807200-8809800	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:8807200-8811600	Weak transcription	Fetal Intestine Large	intestine
28	chr11:8807400-8811400	Weak transcription	Lung	lung
29	chr11:8807600-8809600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:8807600-8814000	Weak transcription	Fetal Lung	lung
31	chr11:8807600-8815200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:8807800-8810200	Weak transcription	Small Intestine	intestine
33	chr11:8807800-8811000	Weak transcription	Liver	Liver
34	chr11:8807800-8814200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:8808000-8810400	Enhancers	Ovary	ovary
36	chr11:8808000-8810600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr11:8808200-8809400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:8808200-8809400	Enhancers	Fetal Muscle Leg	muscle
39	chr11:8808200-8809600	Enhancers	Rectal Smooth Muscle	rectum
40	chr11:8808200-8810000	Weak transcription	Gastric	stomach
41	chr11:8808200-8813200	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:8808200-8815800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:8808400-8809400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:8808400-8809400	Enhancers	HMEC	breast
45	chr11:8808400-8809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:8808400-8812000	Weak transcription	Fetal Intestine Small	intestine
47	chr11:8808600-8810800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:8808600-8811400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:8808600-8814400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:8808600-8819400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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