Variant report

Variant	rs10400371
Chromosome Location	chr11:59579228-59579229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59560226..59562166-chr11:59576815..59579277,2	MCF-7	breast:
2	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
3	chr11:59382346..59384021-chr11:59576839..59579644,2	K562	blood:

Variant related genes	Relation type
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction

rs_ID	r²[population]
rs34753750	1.00[AFR][1000 genomes]
rs7108177	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7121560	0.83[AFR][1000 genomes]
rs7122468	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7124135	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7124464	0.83[AFR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59578600-59580600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:59578600-59581600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:59578600-59581600	Weak transcription	Ovary	ovary
4	chr11:59578800-59580200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:59578800-59580800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:59578800-59581400	Weak transcription	Fetal Thymus	thymus
7	chr11:59578800-59581600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:59578800-59581600	Weak transcription	Primary B cells from cord blood	blood
9	chr11:59578800-59581600	Weak transcription	Osteobl	bone
10	chr11:59578800-59581800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:59579000-59580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:59579000-59580800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:59579000-59580800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:59579000-59580800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:59579000-59581000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:59579000-59581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:59579000-59581600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:59579000-59581600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:59579000-59581600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:59579000-59581600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:59579000-59581600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:59579000-59581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:59579000-59581600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:59579000-59581600	Weak transcription	Thymus	Thymus
25	chr11:59579000-59581600	Weak transcription	HepG2	liver
26	chr11:59579000-59581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:59579000-59581800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:59579000-59581800	Weak transcription	K562	blood
29	chr11:59579000-59586200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:59579200-59580200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:59579200-59580600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:59579200-59580800	Weak transcription	Dnd41	blood
33	chr11:59579200-59581000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:59579200-59581000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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