Variant report

Variant	rs7122468
Chromosome Location	chr11:59577364-59577365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:
2	chr11:59560226..59562166-chr11:59576815..59579277,2	MCF-7	breast:
3	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
4	chr11:59382346..59384021-chr11:59576839..59579644,2	K562	blood:

Variant related genes	Relation type
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction

rs_ID	r²[population]
rs10400371	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11230109	1.00[MEX][hapmap]
rs12282741	1.00[MEX][hapmap]
rs12364373	1.00[MEX][hapmap]
rs34753750	1.00[AFR][1000 genomes]
rs7108177	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7121560	0.83[AFR][1000 genomes]
rs7124135	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7124464	0.83[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59570000-59577400	Weak transcription	Right Atrium	heart
2	chr11:59574800-59577400	Weak transcription	Aorta	Aorta
3	chr11:59574800-59577600	Weak transcription	Lung	lung
4	chr11:59574800-59577800	Weak transcription	Small Intestine	intestine
5	chr11:59575400-59577400	Weak transcription	Ovary	ovary
6	chr11:59576400-59577600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:59576400-59577800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:59576400-59578600	Active TSS	K562	blood
9	chr11:59576600-59577600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr11:59576800-59577400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:59576800-59577400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:59576800-59577400	Enhancers	Pancreas	Pancrea
13	chr11:59576800-59577400	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr11:59576800-59577400	Transcr. at gene 5' and 3'	Hela-S3	cervix
15	chr11:59576800-59578400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:59576800-59578600	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:59576800-59578800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:59577000-59577400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:59577000-59577400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:59577000-59577400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr11:59577000-59577400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:59577000-59577400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:59577000-59577400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:59577000-59577400	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr11:59577000-59577400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr11:59577000-59577400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:59577000-59577400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:59577000-59577400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:59577000-59577400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:59577000-59577400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr11:59577000-59577400	Enhancers	Fetal Brain Male	brain
32	chr11:59577000-59577400	Flanking Active TSS	Fetal Intestine Large	intestine
33	chr11:59577000-59577400	Flanking Active TSS	Fetal Intestine Small	intestine
34	chr11:59577000-59577400	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr11:59577000-59577400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
36	chr11:59577000-59577400	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr11:59577000-59577400	Flanking Active TSS	A549	lung
38	chr11:59577000-59577400	Flanking Active TSS	GM12878-XiMat	blood
39	chr11:59577000-59577400	Flanking Active TSS	HUVEC	blood vessel
40	chr11:59577000-59577400	Flanking Active TSS	NHEK	skin
41	chr11:59577000-59577400	Flanking Active TSS	NHLF	lung
42	chr11:59577000-59577600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:59577000-59577600	Enhancers	Primary B cells from cord blood	blood
44	chr11:59577000-59577600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr11:59577000-59577600	Enhancers	Brain Angular Gyrus	brain
46	chr11:59577000-59577600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:59577000-59577600	Enhancers	Brain Substantia Nigra	brain
48	chr11:59577000-59577600	Enhancers	Fetal Heart	heart
49	chr11:59577000-59577600	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr11:59577000-59577600	Enhancers	Stomach Mucosa	stomach

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