Variant report

Variant	rs10402073
Chromosome Location	chr19:44600185-44600186
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44596713..44600957-chr19:44644435..44647275,5	MCF-7	breast:
2	chr19:44555396..44557599-chr19:44598429..44600981,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263002	Chromatin interaction
ENSG00000178386	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10401658	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406369	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408394	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10410718	1.00[AMR][1000 genomes]
rs58326735	0.83[AMR][1000 genomes]
rs60105043	0.83[AMR][1000 genomes]
rs73553206	1.00[AMR][1000 genomes]
rs73558293	1.00[AMR][1000 genomes]
rs73558296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73564008	1.00[AMR][1000 genomes]
rs73564029	0.83[AMR][1000 genomes]
rs73934325	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44597800-44600200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:44598000-44600200	Active TSS	Right Ventricle	heart
3	chr19:44598000-44600200	Active TSS	Hela-S3	cervix
4	chr19:44598000-44600600	Active TSS	GM12878-XiMat	blood
5	chr19:44598200-44600200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:44598200-44600200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr19:44599600-44600200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:44599600-44600400	Flanking Active TSS	Dnd41	blood
9	chr19:44599600-44601000	Weak transcription	Aorta	Aorta
10	chr19:44599600-44601800	Weak transcription	Gastric	stomach
11	chr19:44599600-44601800	Weak transcription	Pancreas	Pancrea
12	chr19:44599600-44602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:44599600-44604400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr19:44599600-44604400	Weak transcription	Spleen	Spleen
15	chr19:44599600-44604800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr19:44599600-44608000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:44599600-44609000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:44599600-44610600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr19:44599600-44611000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:44599800-44600200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr19:44599800-44600200	Enhancers	Primary B cells from cord blood	blood
22	chr19:44599800-44600200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:44599800-44600200	Enhancers	Brain Germinal Matrix	brain
24	chr19:44599800-44600200	Enhancers	Colonic Mucosa	Colon
25	chr19:44599800-44600200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr19:44599800-44600200	Enhancers	HepG2	liver
27	chr19:44599800-44600200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr19:44599800-44600400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr19:44599800-44600400	Weak transcription	Brain Anterior Caudate	brain
30	chr19:44599800-44600400	Weak transcription	HSMM	muscle
31	chr19:44599800-44600400	Weak transcription	HSMMtube	muscle
32	chr19:44599800-44600600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:44599800-44600600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr19:44599800-44600600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr19:44599800-44600600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:44599800-44600600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr19:44599800-44600600	Enhancers	Adipose Nuclei	Adipose
38	chr19:44599800-44600600	Enhancers	Fetal Muscle Leg	muscle
39	chr19:44599800-44600800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr19:44599800-44600800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr19:44599800-44600800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr19:44599800-44600800	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr19:44599800-44600800	Weak transcription	Fetal Lung	lung
44	chr19:44599800-44600800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:44599800-44600800	Weak transcription	NHDF-Ad	bronchial
46	chr19:44599800-44601000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr19:44599800-44601000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr19:44599800-44601000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr19:44599800-44601000	Enhancers	Colon Smooth Muscle	Colon
50	chr19:44599800-44601000	Weak transcription	Left Ventricle	heart

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