Variant report

Variant	rs73558293
Chromosome Location	chr19:44601023-44601024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:44600975-44601175	A549	lung:	n/a	chr19:44601131-44601142
2	POLR2A	chr19:44600981-44601044	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr19:44600997-44601215	HepG2	liver:	n/a	chr19:44601131-44601142

Variant related genes	Relation type
ZNF224	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10401658	1.00[AMR][1000 genomes]
rs10402073	1.00[AMR][1000 genomes]
rs10406369	1.00[AMR][1000 genomes]
rs10408394	1.00[AMR][1000 genomes]
rs10410718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58326735	0.83[AMR][1000 genomes]
rs60105043	0.83[AMR][1000 genomes]
rs73553206	1.00[AMR][1000 genomes]
rs73558296	1.00[AMR][1000 genomes]
rs73564008	1.00[AMR][1000 genomes]
rs73564029	0.83[AMR][1000 genomes]
rs73934325	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44599600-44601800	Weak transcription	Gastric	stomach
2	chr19:44599600-44601800	Weak transcription	Pancreas	Pancrea
3	chr19:44599600-44602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:44599600-44604400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr19:44599600-44604400	Weak transcription	Spleen	Spleen
6	chr19:44599600-44604800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:44599600-44608000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:44599600-44609000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:44599600-44610600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr19:44599600-44611000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:44599800-44601200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr19:44599800-44601200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:44599800-44601400	Weak transcription	Brain Angular Gyrus	brain
14	chr19:44599800-44601400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:44599800-44601400	Weak transcription	Brain Substantia Nigra	brain
16	chr19:44599800-44601600	Weak transcription	Fetal Kidney	kidney
17	chr19:44599800-44601800	Weak transcription	Fetal Stomach	stomach
18	chr19:44599800-44601800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr19:44599800-44601800	Weak transcription	Osteobl	bone
20	chr19:44599800-44602400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr19:44599800-44602600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:44599800-44604400	Weak transcription	Psoas Muscle	Psoas
23	chr19:44599800-44604600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr19:44599800-44604600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr19:44599800-44604600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr19:44599800-44604600	Weak transcription	HUVEC	blood vessel
27	chr19:44599800-44604600	Weak transcription	NH-A	brain
28	chr19:44599800-44604800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:44599800-44604800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr19:44599800-44605000	Weak transcription	Small Intestine	intestine
31	chr19:44599800-44605000	Weak transcription	K562	blood
32	chr19:44599800-44605200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr19:44599800-44606000	Weak transcription	Fetal Heart	heart
34	chr19:44599800-44609200	Weak transcription	NHEK	skin
35	chr19:44599800-44610400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr19:44600000-44601400	Weak transcription	Brain Hippocampus Middle	brain
37	chr19:44600000-44601400	Weak transcription	Placenta	Placenta
38	chr19:44600000-44601400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr19:44600000-44601800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr19:44600000-44601800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr19:44600000-44601800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr19:44600000-44601800	Weak transcription	Esophagus	oesophagus
43	chr19:44600000-44601800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:44600000-44602000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr19:44600000-44602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr19:44600000-44602600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr19:44600000-44602800	Weak transcription	Fetal Intestine Small	intestine
48	chr19:44600000-44603200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr19:44600000-44604000	Weak transcription	Thymus	Thymus
50	chr19:44600000-44605400	Weak transcription	NHLF	lung

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