Variant report

Variant	rs10404441
Chromosome Location	chr19:45325929-45325930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:45324421..45326351-chr19:45338300..45340286,2	K562	blood:
2	chr19:45315797..45318233-chr19:45324446..45328340,3	MCF-7	breast:
3	chr19:45309744..45311644-chr19:45324913..45327057,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187244	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10402103	1.00[AFR][1000 genomes]
rs10405104	1.00[EUR][1000 genomes]
rs10410517	0.89[AFR][1000 genomes]
rs10415477	1.00[AFR][1000 genomes]
rs10426988	1.00[AFR][1000 genomes]
rs28399632	1.00[AFR][1000 genomes]
rs28399642	1.00[EUR][1000 genomes]
rs28528835	0.89[AFR][1000 genomes]
rs9967601	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912118	chr19:45300056-45326664	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3332339	chr19:45321161-45351386	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45313600-45326400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:45313600-45326600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:45314600-45326200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:45318400-45326400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:45319000-45326400	Weak transcription	Gastric	stomach
6	chr19:45319000-45326800	Weak transcription	Fetal Kidney	kidney
7	chr19:45319200-45326400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:45321000-45327000	Enhancers	Fetal Heart	heart
9	chr19:45321600-45326400	Weak transcription	Liver	Liver
10	chr19:45322000-45326200	Weak transcription	A549	lung
11	chr19:45322000-45326400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr19:45322000-45326400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr19:45322600-45326600	Enhancers	Left Ventricle	heart
14	chr19:45323000-45326000	Weak transcription	HepG2	liver
15	chr19:45323200-45326800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr19:45323600-45326400	Weak transcription	Pancreas	Pancrea
17	chr19:45323800-45326400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr19:45323800-45326600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr19:45324000-45328200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr19:45324200-45326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr19:45324200-45326400	Weak transcription	Fetal Intestine Small	intestine
22	chr19:45324200-45326400	Weak transcription	Lung	lung
23	chr19:45324200-45326600	Weak transcription	Fetal Intestine Large	intestine
24	chr19:45324200-45327400	Enhancers	Fetal Muscle Trunk	muscle
25	chr19:45324200-45327400	Enhancers	Fetal Muscle Leg	muscle
26	chr19:45324400-45326400	Weak transcription	Fetal Lung	lung
27	chr19:45324600-45326400	Weak transcription	Right Atrium	heart
28	chr19:45324800-45327200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr19:45324800-45329000	Weak transcription	Right Ventricle	heart
30	chr19:45325400-45326800	Enhancers	Adipose Nuclei	Adipose
31	chr19:45325600-45326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:45325600-45326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:45325600-45327000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:45325800-45326400	Weak transcription	Placenta	Placenta

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