Variant report

Variant	rs10405261
Chromosome Location	chr19:39057704-39057705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10405232	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10413936	1.00[YRI][hapmap]
rs10415792	0.81[AFR][1000 genomes]
rs10420476	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421560	1.00[YRI][hapmap]
rs13344413	1.00[YRI][hapmap]
rs2287734	1.00[YRI][hapmap]
rs2303040	1.00[YRI][hapmap]
rs3786839	1.00[YRI][hapmap]
rs7251903	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv911660	chr19:38852357-39060238	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv911663	chr19:38899548-39101879	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv833824	chr19:38914618-39084758	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv911665	chr19:38924814-39101879	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv833826	chr19:38945106-39184547	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv833827	chr19:38993054-39184547	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv1058902	chr19:39025940-39078574	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1064490	chr19:39029788-39078574	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38985200-39081800	Weak transcription	Psoas Muscle	Psoas
2	chr19:39035200-39066400	Strong transcription	Skeletal Muscle Male	skeletal muscle
3	chr19:39036000-39076400	Weak transcription	Brain Substantia Nigra	brain
4	chr19:39051600-39066400	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr19:39053200-39077800	Weak transcription	Brain Hippocampus Middle	brain
6	chr19:39053200-39086800	Weak transcription	Brain Angular Gyrus	brain
7	chr19:39053200-39086800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:39053400-39075400	Weak transcription	Brain Anterior Caudate	brain
9	chr19:39053800-39061400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:39055400-39058400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:39056400-39059400	Weak transcription	Gastric	stomach
12	chr19:39056400-39086400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr19:39056600-39066400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr19:39056600-39066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:39056600-39070400	Weak transcription	Esophagus	oesophagus
16	chr19:39056800-39057800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr19:39056800-39068400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:39056800-39075400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr19:39056800-39077800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr19:39057200-39058800	Strong transcription	HSMMtube	muscle
21	chr19:39057200-39085200	Strong transcription	Fetal Muscle Leg	muscle
22	chr19:39057400-39076800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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