Variant report

Variant	rs10420476
Chromosome Location	chr19:39003242-39003243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10405232	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10405261	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10413936	1.00[YRI][hapmap]
rs10415792	0.81[AFR][1000 genomes]
rs10421560	1.00[YRI][hapmap]
rs13344413	1.00[YRI][hapmap]
rs2287734	1.00[YRI][hapmap]
rs2303040	1.00[YRI][hapmap]
rs3786839	1.00[YRI][hapmap]
rs7251903	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv911660	chr19:38852357-39060238	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv833823	chr19:38855550-39035800	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv911663	chr19:38899548-39101879	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv833824	chr19:38914618-39084758	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1816081	chr19:38919971-39050479	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv911664	chr19:38924814-39048163	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv911665	chr19:38924814-39101879	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv833826	chr19:38945106-39184547	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv911666	chr19:38948356-39014184	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv833827	chr19:38993054-39184547	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38934800-39005600	Strong transcription	Fetal Muscle Leg	muscle
2	chr19:38940000-39006400	Weak transcription	HSMM	muscle
3	chr19:38960800-39034400	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr19:38963000-39033000	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr19:38976800-39005400	Weak transcription	Brain Anterior Caudate	brain
6	chr19:38981600-39005600	Weak transcription	Brain Substantia Nigra	brain
7	chr19:38981800-39005400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:38982200-39005600	Weak transcription	Brain Hippocampus Middle	brain
9	chr19:38985200-39081800	Weak transcription	Psoas Muscle	Psoas
10	chr19:38988200-39005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr19:38996200-39007800	Weak transcription	Right Atrium	heart
12	chr19:38997600-39007000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr19:38997600-39025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:38997800-39005600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr19:38998000-39004400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:38998200-39003400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr19:38998200-39003800	Strong transcription	HSMMtube	muscle
18	chr19:38998400-39005600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr19:38998600-39025000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr19:38998800-39005400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr19:38999200-39003400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:39000000-39005400	Weak transcription	K562	blood
23	chr19:39000000-39013400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr19:39001000-39025600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr19:39001600-39007200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr19:39002200-39005400	Weak transcription	A549	lung
27	chr19:39003000-39003400	Strong transcription	Adipose Nuclei	Adipose
28	chr19:39003200-39005200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr19:39003200-39005400	Weak transcription	Pancreas	Pancrea
30	chr19:39003200-39005600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr19:39003200-39006600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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