Variant report

Variant	rs10408754
Chromosome Location	chr19:44844266-44844267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44840012..44842382-chr19:44842784..44845287,2	MCF-7	breast:
2	chr19:44807123..44810005-chr19:44842666..44844812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159917	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10403069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10403300	1.00[AMR][1000 genomes]
rs10403472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404507	1.00[AMR][1000 genomes]
rs10410305	0.82[AFR][1000 genomes]
rs10416035	1.00[AMR][1000 genomes]
rs10418432	0.82[AFR][1000 genomes]
rs10418753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419604	1.00[AMR][1000 genomes]
rs10419801	1.00[AMR][1000 genomes]
rs16978965	1.00[AMR][1000 genomes]
rs28366812	1.00[AMR][1000 genomes]
rs28431370	1.00[AMR][1000 genomes]
rs28588242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
6	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
7	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:44830400-44845000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr19:44830600-44845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr19:44830800-44845600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:44831800-44845000	ZNF genes & repeats	Fetal Muscle Leg	muscle
16	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:44832000-44845600	Weak transcription	Hela-S3	cervix
18	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:44837400-44844800	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr19:44837400-44845200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
21	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
22	chr19:44839400-44845000	Strong transcription	NH-A	brain
23	chr19:44839400-44845200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr19:44839400-44845600	Weak transcription	Stomach Mucosa	stomach
25	chr19:44839800-44846400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr19:44840000-44845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:44840400-44845200	Strong transcription	HSMM	muscle
28	chr19:44840400-44846200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:44840600-44844600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr19:44840800-44845400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr19:44840800-44846200	Strong transcription	Brain Angular Gyrus	brain
32	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
33	chr19:44841000-44847400	Weak transcription	Primary B cells from cord blood	blood
34	chr19:44841200-44844400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:44841200-44844600	Weak transcription	Primary T cells from cord blood	blood
36	chr19:44841200-44846400	Weak transcription	NHLF	lung
37	chr19:44841200-44847000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:44841800-44844600	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr19:44841800-44846600	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr19:44842000-44844600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr19:44842200-44845000	Strong transcription	Brain Anterior Caudate	brain
42	chr19:44842200-44845000	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr19:44842200-44845200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:44842200-44846200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr19:44842200-44846200	ZNF genes & repeats	Aorta	Aorta
46	chr19:44842400-44844600	Strong transcription	Brain Substantia Nigra	brain
47	chr19:44842400-44844600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr19:44842400-44844800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr19:44842400-44844800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:44842400-44844800	ZNF genes & repeats	A549	lung

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