Variant report

Variant	rs10418753
Chromosome Location	chr19:44845722-44845723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10403069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10403300	1.00[AMR][1000 genomes]
rs10403472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404507	1.00[AMR][1000 genomes]
rs10408754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10410305	0.82[AFR][1000 genomes]
rs10416035	1.00[AMR][1000 genomes]
rs10418432	0.82[AFR][1000 genomes]
rs10419604	1.00[AMR][1000 genomes]
rs10419801	1.00[AMR][1000 genomes]
rs16978965	1.00[AMR][1000 genomes]
rs28366812	1.00[AMR][1000 genomes]
rs28431370	1.00[AMR][1000 genomes]
rs28588242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
5	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
13	chr19:44839800-44846400	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr19:44840400-44846200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:44840800-44846200	Strong transcription	Brain Angular Gyrus	brain
16	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
17	chr19:44841000-44847400	Weak transcription	Primary B cells from cord blood	blood
18	chr19:44841200-44846400	Weak transcription	NHLF	lung
19	chr19:44841200-44847000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:44841800-44846600	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr19:44842200-44846200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr19:44842200-44846200	ZNF genes & repeats	Aorta	Aorta
23	chr19:44842400-44846400	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr19:44842800-44850200	Weak transcription	Fetal Heart	heart
25	chr19:44843000-44846200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
26	chr19:44843000-44848800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr19:44843400-44846600	ZNF genes & repeats	Fetal Kidney	kidney
28	chr19:44843800-44846600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr19:44844000-44846000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr19:44844000-44846200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:44844000-44847400	Weak transcription	Colonic Mucosa	Colon
32	chr19:44844200-44859600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr19:44844200-44859800	Weak transcription	Osteobl	bone
34	chr19:44844600-44846200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr19:44844600-44847200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:44844600-44847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:44844600-44848600	Weak transcription	Brain Substantia Nigra	brain
38	chr19:44844800-44846000	Weak transcription	Fetal Intestine Large	intestine
39	chr19:44844800-44846000	Strong transcription	A549	lung
40	chr19:44844800-44847400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr19:44844800-44847400	Weak transcription	Right Ventricle	heart
42	chr19:44844800-44847600	Weak transcription	Placenta	Placenta
43	chr19:44844800-44847600	Weak transcription	Gastric	stomach
44	chr19:44844800-44848600	Weak transcription	Left Ventricle	heart
45	chr19:44844800-44851000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr19:44844800-44853000	Weak transcription	HSMMtube	muscle
47	chr19:44845000-44847400	Weak transcription	Fetal Muscle Leg	muscle
48	chr19:44845000-44847400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:44845000-44848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:44845000-44848600	Weak transcription	Brain Anterior Caudate	brain

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