Variant report

Variant	rs10409476
Chromosome Location	chr19:36863005-36863006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10402218	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418440	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10420984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425127	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13346636	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8112508	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv174	chr19:36831719-36865415	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
6	chr19:36836600-36863400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
8	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr19:36846600-36866400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:36850000-36868000	Weak transcription	Fetal Heart	heart
11	chr19:36851800-36863600	Weak transcription	Fetal Kidney	kidney
12	chr19:36852200-36867600	Weak transcription	HepG2	liver
13	chr19:36856600-36868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:36857600-36865400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:36858000-36868600	Weak transcription	Brain Substantia Nigra	brain
16	chr19:36858000-36869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:36858400-36863400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:36858400-36868200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr19:36858400-36868800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr19:36858400-36869400	Weak transcription	Left Ventricle	heart
21	chr19:36858600-36868600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr19:36858600-36868600	Weak transcription	Brain Anterior Caudate	brain
23	chr19:36858600-36869200	Weak transcription	Pancreas	Pancrea
24	chr19:36858600-36869200	Weak transcription	Right Ventricle	heart
25	chr19:36858800-36868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:36859000-36863600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr19:36859000-36865400	Weak transcription	Brain Angular Gyrus	brain
28	chr19:36859000-36865600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr19:36859000-36865800	Weak transcription	Dnd41	blood
30	chr19:36859000-36868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:36859000-36868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr19:36859000-36868800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr19:36859000-36869000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:36859200-36865600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:36859600-36867600	Weak transcription	Colon Smooth Muscle	Colon
36	chr19:36859800-36863600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:36860800-36863800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr19:36861000-36866000	ZNF genes & repeats	Fetal Brain Female	brain
39	chr19:36861400-36864000	Strong transcription	Fetal Lung	lung
40	chr19:36861600-36865600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr19:36861600-36868800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr19:36861800-36863400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr19:36861800-36864800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:36861800-36865600	Weak transcription	Brain Hippocampus Middle	brain
45	chr19:36861800-36867600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:36861800-36867800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr19:36861800-36868000	Weak transcription	Fetal Brain Male	brain
48	chr19:36861800-36868400	Weak transcription	Ovary	ovary
49	chr19:36861800-36868600	Weak transcription	Adipose Nuclei	Adipose
50	chr19:36861800-36868600	Weak transcription	Rectal Mucosa Donor 29	rectum

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