Variant report

Variant	rs10418440
Chromosome Location	chr19:36909814-36909815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:36909720-36909870	GM12865	blood:	n/a	n/a
2	TAF1	chr19:36909310-36909889	SK-N-SH	brain:	n/a	n/a
3	HMGN3	chr19:36909255-36909880	K562	blood:	n/a	n/a
4	E2F6	chr19:36909345-36909906	H1-hESC	embryonic stem cell:	n/a	chr19:36909599-36909609 chr19:36909597-36909606 chr19:36909718-36909733
5	E2F6	chr19:36908594-36910011	H1-hESC	embryonic stem cell:	n/a	chr19:36909599-36909609 chr19:36909597-36909606 chr19:36909718-36909733
6	POLR2A	chr19:36909030-36909854	GM12878	blood:	n/a	n/a
7	POLR2A	chr19:36909063-36909920	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr19:36909800-36909950	HCPEpiC	choroid plexus:	n/a	n/a
9	POLR2A	chr19:36909341-36909828	Hela-S3	cervix:	n/a	n/a
10	TAF1	chr19:36909259-36909832	A549	lung:	n/a	n/a
11	POLR2A	chr19:36909117-36910017	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr19:36909349-36909814	K562	blood:	n/a	n/a
13	POLR2A	chr19:36909285-36909836	HepG2	liver:	n/a	n/a
14	CTCF	chr19:36909758-36909843	GM12892	blood:	n/a	n/a
15	POLR2A	chr19:36909226-36909900	SK-N-SH	brain:	n/a	n/a
16	CTCF	chr19:36909680-36909830	GM06990	blood:	n/a	n/a
17	MAX	chr19:36908512-36909936	K562	blood:	n/a	n/a
18	POLR2A	chr19:36909354-36909820	K562	blood:	n/a	n/a
19	MAX	chr19:36908607-36909821	GM12878	blood:	n/a	n/a
20	MAX	chr19:36909286-36909872	Hela-S3	cervix:	n/a	n/a
21	MAX	chr19:36908910-36909909	HepG2	liver:	n/a	n/a
22	FOXP2	chr19:36909176-36909904	PFSK-1	brain:	n/a	n/a
23	POLR2A	chr19:36909166-36909944	PANC-1	pancreas:	n/a	n/a
24	ZNF143	chr19:36909364-36909832	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAZ	chr19:36908601-36910028	IMR90	lung:	n/a	n/a
26	POLR2A	chr19:36909347-36909857	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr19:36908795-36909953	HepG2	liver:	n/a	n/a
28	NRF1	chr19:36909231-36910321	SK-N-SH	brain:	n/a	chr19:36909596-36909605 chr19:36909596-36909610 chr19:36909593-36909607 chr19:36909596-36909607
29	CTCF	chr19:36909700-36909850	SK-N-SH_RA	brain:	n/a	n/a
30	MAX	chr19:36908588-36910199	A549	lung:	n/a	n/a
31	POLR2A	chr19:36909268-36909880	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr19:36909298-36909890	HepG2	liver:	n/a	n/a
33	CREB1	chr19:36908976-36909834	HepG2	liver:	n/a	n/a
34	TBP	chr19:36909094-36909815	K562	blood:	n/a	n/a
35	RCOR1	chr19:36908014-36910259	IMR90	lung:	n/a	n/a
36	CTCF	chr19:36909700-36909850	GM12864	blood:	n/a	n/a
37	MAX	chr19:36908789-36909859	SK-N-SH	brain:	n/a	n/a
38	REST	chr19:36908887-36910110	H1-neurons	neurons:	n/a	chr19:36909264-36909284 chr19:36909182-36909195
39	POLR2A	chr19:36909171-36909850	A549	lung:	n/a	n/a
40	CTCF	chr19:36909680-36909830	AG04449	skin:	n/a	n/a
41	TAF1	chr19:36909326-36909878	PFSK-1	brain:	n/a	n/a
42	TAF1	chr19:36909415-36909964	ECC-1	luminal epithelium:	n/a	n/a
43	RAD21	chr19:36909581-36909857	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr19:36909190-36909873	GM18951	blood:	n/a	n/a
45	HEY1	chr19:36909268-36909903	HepG2	liver:	n/a	chr19:36909712-36909727
46	POLR2A	chr19:36909093-36909931	SK-N-MC	brain:	n/a	n/a
47	POLR2A	chr19:36909072-36909937	Gliobla	brain:	n/a	n/a
48	POLR2A	chr19:36909165-36909962	Hela-S3	cervix:	n/a	n/a
49	CTCF	chr19:36909680-36909830	GM12871	blood:	n/a	n/a
50	POLR2A	chr19:36909099-36909868	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000267142	TF binding region
ZFP82	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10402218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415775	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10420984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13346636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8112508	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36907800-36910000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:36908000-36910000	Active TSS	K562	blood
3	chr19:36908200-36910000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr19:36908200-36910000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr19:36908200-36910000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr19:36908200-36910000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:36908200-36910000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:36908200-36910000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr19:36908200-36910000	Active TSS	Ovary	ovary
10	chr19:36908200-36910000	Active TSS	Psoas Muscle	Psoas
11	chr19:36908200-36910000	Active TSS	HepG2	liver
12	chr19:36908200-36910200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr19:36908200-36910200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr19:36908200-36910200	ZNF genes & repeats	Liver	Liver
15	chr19:36908200-36910200	Active TSS	NHLF	lung
16	chr19:36908400-36910000	Active TSS	Fetal Intestine Large	intestine
17	chr19:36908400-36910000	Active TSS	Fetal Kidney	kidney
18	chr19:36908400-36910000	Active TSS	Gastric	stomach
19	chr19:36908400-36910200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:36908400-36910200	Active TSS	NHDF-Ad	bronchial
21	chr19:36908600-36910000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:36908600-36910000	Active TSS	Hela-S3	cervix
23	chr19:36908600-36910200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr19:36908800-36910000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr19:36908800-36910000	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr19:36908800-36910000	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr19:36908800-36910000	Active TSS	Aorta	Aorta
28	chr19:36908800-36910000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr19:36908800-36910000	Active TSS	Brain Substantia Nigra	brain
30	chr19:36908800-36910000	Active TSS	Fetal Lung	lung
31	chr19:36908800-36910000	Active TSS	GM12878-XiMat	blood
32	chr19:36908800-36910200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:36908800-36910200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:36908800-36910200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:36908800-36910200	Active TSS	Brain Angular Gyrus	brain
36	chr19:36908800-36910200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:36908800-36910200	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr19:36908800-36910200	Active TSS	HSMM	muscle
39	chr19:36908800-36910200	Active TSS	HSMMtube	muscle
40	chr19:36908800-36910200	Active TSS	NH-A	brain
41	chr19:36908800-36910400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr19:36908800-36910400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:36909000-36910000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:36909000-36910000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr19:36909000-36910000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:36909000-36910000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr19:36909000-36910000	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr19:36909000-36910000	Active TSS	Muscle Satellite Cultured Cells	--
49	chr19:36909000-36910000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr19:36909000-36910000	Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links