Variant report

Variant	rs10410282
Chromosome Location	chr19:41936197-41936198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:41936114-41936366	K562	blood:	n/a	n/a
2	POLR2A	chr19:41936015-41936390	U87	brain:	n/a	n/a
3	POLR2A	chr19:41935766-41936395	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41932975..41939032-chr19:41942824..41947362,11	K562	blood:
2	chr19:41869689..41871301-chr19:41934522..41938582,3	MCF-7	breast:
3	chr19:41928996..41931842-chr19:41934329..41936851,2	MCF-7	breast:
4	chr19:41935462..41938566-chr19:41944097..41946991,4	MCF-7	breast:
5	chr19:41927679..41929725-chr19:41935505..41937205,2	MCF-7	breast:

No data

Variant related genes	Relation type
B3GNT8	TF binding region
ENSG00000142046	Chromatin interaction
ENSG00000248098	Chromatin interaction
ENSG00000105341	Chromatin interaction
ENSG00000123810	Chromatin interaction
ENSG00000268475	Chromatin interaction

rs_ID	r²[population]
rs10406198	0.91[AFR][1000 genomes]
rs10407077	0.91[AFR][1000 genomes]
rs10409823	1.00[AFR][1000 genomes]
rs10410801	0.91[AFR][1000 genomes]
rs10415116	0.91[AFR][1000 genomes]
rs10418899	1.00[AFR][1000 genomes]
rs10419188	0.83[AFR][1000 genomes]
rs10425351	1.00[AFR][1000 genomes]
rs11539797	1.00[AFR][1000 genomes]
rs13343330	0.91[AFR][1000 genomes]
rs13346881	1.00[AFR][1000 genomes]
rs2231933	0.91[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41932400-41936400	Weak transcription	Dnd41	blood
2	chr19:41932600-41936800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr19:41933200-41938200	Weak transcription	Fetal Kidney	kidney
4	chr19:41933800-41938000	Weak transcription	Psoas Muscle	Psoas
5	chr19:41934000-41936800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr19:41934000-41944800	Weak transcription	Hela-S3	cervix
7	chr19:41934200-41936800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:41934200-41937200	Weak transcription	HepG2	liver
9	chr19:41934200-41937400	Weak transcription	Ovary	ovary
10	chr19:41934200-41937600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:41934200-41938000	Weak transcription	Osteobl	bone
12	chr19:41934200-41938200	Weak transcription	Brain Angular Gyrus	brain
13	chr19:41934400-41936600	Weak transcription	Brain Anterior Caudate	brain
14	chr19:41934400-41936800	Weak transcription	Pancreas	Pancrea
15	chr19:41934400-41939600	Strong transcription	Brain Germinal Matrix	brain
16	chr19:41934400-41945000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr19:41934600-41936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:41934600-41936600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr19:41934600-41936600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr19:41934600-41936800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:41934600-41936800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr19:41934600-41936800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr19:41934600-41936800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:41934600-41936800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr19:41934600-41936800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:41934600-41936800	Weak transcription	Gastric	stomach
27	chr19:41934600-41936800	Weak transcription	Right Atrium	heart
28	chr19:41934600-41937000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr19:41934600-41937000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr19:41934600-41937000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr19:41934600-41937400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr19:41934600-41937400	Weak transcription	NHLF	lung
33	chr19:41934600-41937600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr19:41934600-41937600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr19:41934600-41938000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr19:41934600-41938200	Weak transcription	NH-A	brain
37	chr19:41934600-41938200	Weak transcription	NHDF-Ad	bronchial
38	chr19:41934600-41944200	Weak transcription	Fetal Brain Male	brain
39	chr19:41934800-41936200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr19:41934800-41936200	Weak transcription	Left Ventricle	heart
41	chr19:41934800-41936600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr19:41934800-41936600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr19:41934800-41936800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr19:41934800-41936800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:41934800-41936800	Weak transcription	Adipose Nuclei	Adipose
46	chr19:41934800-41936800	Weak transcription	Placenta	Placenta
47	chr19:41934800-41936800	Weak transcription	HSMMtube	muscle
48	chr19:41934800-41937000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr19:41934800-41937000	Weak transcription	Esophagus	oesophagus
50	chr19:41934800-41937200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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