Variant report

Variant	rs10411113
Chromosome Location	chr19:20958874-20958875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:20958824-20959032	K562	blood:	n/a	chr19:20959022-20959030
2	NFYA	chr19:20958812-20959288	K562	blood:	n/a	chr19:20959019-20959033 chr19:20959021-20959031 chr19:20959021-20959031 chr19:20959018-20959030 chr19:20959019-20959032 chr19:20959019-20959037 chr19:20959019-20959034 chr19:20959019-20959034
3	PBX3	chr19:20958709-20959366	SK-N-SH	brain:	n/a	chr19:20958939-20958948 chr19:20959022-20959031 chr19:20958983-20958992
4	SP2	chr19:20958806-20959308	HepG2	liver:	n/a	chr19:20958996-20959011 chr19:20959022-20959032
5	POLR2A	chr19:20958874-20959437	GM12878	blood:	n/a	n/a
6	IRF3	chr19:20958846-20959197	GM12878	blood:	n/a	chr19:20959000-20959014 chr19:20959021-20959030
7	FOS	chr19:20958863-20959215	GM12878	blood:	n/a	chr19:20959023-20959032
8	POLR2A	chr19:20958801-20959656	GM12878	blood:	n/a	n/a
9	MXI1	chr19:20958624-20960125	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr19:20958821-20959747	GM12892	blood:	n/a	n/a
11	POLR2A	chr19:20958817-20959601	H1-neurons	neurons:	n/a	n/a
12	GATA3	chr19:20958813-20959252	MCF-7	breast:	n/a	n/a
13	PML	chr19:20958802-20959483	GM12878	blood:	n/a	n/a
14	TAF1	chr19:20958868-20959387	MCF-7	breast:	n/a	n/a
15	SIN3AK20	chr19:20958850-20959438	HepG2	liver:	n/a	n/a
16	SP1	chr19:20958761-20959367	GM12878	blood:	n/a	chr19:20959000-20959012 chr19:20958997-20959011 chr19:20959002-20959011 chr19:20959000-20959012 chr19:20959020-20959041 chr19:20959000-20959011 chr19:20959001-20959010
17	FOXM1	chr19:20958805-20959491	GM12878	blood:	n/a	n/a
18	POU2F2	chr19:20958864-20959660	GM12891	blood:	n/a	n/a
19	POLR2A	chr19:20958868-20959341	HepG2	liver:	n/a	n/a
20	SP2	chr19:20958868-20959142	K562	blood:	n/a	chr19:20958996-20959011 chr19:20959022-20959032
21	GABPA	chr19:20958775-20959339	MCF-7	breast:	n/a	n/a
22	POLR2A	chr19:20958800-20959779	GM12878	blood:	n/a	n/a
23	SP1	chr19:20958858-20959282	K562	blood:	n/a	chr19:20959000-20959012 chr19:20958997-20959011 chr19:20959002-20959011 chr19:20959000-20959012 chr19:20959020-20959041 chr19:20959000-20959011 chr19:20959001-20959010
24	USF2	chr19:20958794-20959273	HepG2	liver:	n/a	n/a
25	ELF1	chr19:20958825-20959260	K562	blood:	n/a	n/a
26	MXI1	chr19:20958846-20959578	HepG2	liver:	n/a	n/a
27	USF1	chr19:20958847-20959158	H1-hESC	embryonic stem cell:	n/a	n/a
28	PBX3	chr19:20958780-20959235	GM12878	blood:	n/a	chr19:20958939-20958948 chr19:20959022-20959031 chr19:20958983-20958992
29	PBX3	chr19:20958726-20959468	SK-N-SH	brain:	n/a	chr19:20958939-20958948 chr19:20959022-20959031 chr19:20958983-20958992
30	HEY1	chr19:20958772-20959405	HepG2	liver:	n/a	n/a
31	POLR2A	chr19:20958862-20959417	ProgFib	skin:	n/a	n/a
32	GABPA	chr19:20958853-20959119	K562	blood:	n/a	n/a
33	USF1	chr19:20958829-20959122	SK-N-SH_RA	brain:	n/a	n/a
34	ARID3A	chr19:20958836-20959136	HepG2	liver:	n/a	n/a
35	TAF7	chr19:20958863-20959399	H1-hESC	embryonic stem cell:	n/a	n/a
36	SP1	chr19:20958760-20959306	H1-hESC	embryonic stem cell:	n/a	chr19:20959000-20959012 chr19:20958997-20959011 chr19:20959002-20959011 chr19:20959000-20959012 chr19:20959020-20959041 chr19:20959000-20959011 chr19:20959001-20959010
37	TAF1	chr19:20958762-20959753	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD2	chr19:20958831-20959334	H1-hESC	embryonic stem cell:	n/a	n/a
39	ELK1	chr19:20958824-20959200	GM12878	blood:	n/a	n/a
40	POLR2A	chr19:20958837-20959591	H1-hESC	embryonic stem cell:	n/a	n/a
41	REST	chr19:20958843-20959504	SK-N-SH	brain:	n/a	chr19:20958886-20958899
42	NFYA	chr19:20958830-20959365	GM12878	blood:	n/a	chr19:20959019-20959033 chr19:20959021-20959031 chr19:20959021-20959031 chr19:20959018-20959030 chr19:20959019-20959032 chr19:20959019-20959037 chr19:20959019-20959034 chr19:20959019-20959034
43	SRF	chr19:20958805-20959149	ECC-1	luminal epithelium:	n/a	chr19:20958999-20959009
44	SIN3AK20	chr19:20958850-20959233	SK-N-SH	brain:	n/a	n/a
45	POLR2A	chr19:20958853-20959606	HepG2	liver:	n/a	n/a
46	SP1	chr19:20958777-20959275	H1-hESC	embryonic stem cell:	n/a	chr19:20959000-20959012 chr19:20958997-20959011 chr19:20959002-20959011 chr19:20959000-20959012 chr19:20959020-20959041 chr19:20959000-20959011 chr19:20959001-20959010
47	POLR2A	chr19:20958864-20959794	GM19099	blood:	n/a	n/a
48	CTCF	chr19:20958872-20959075	Spleen_OC	spleen:	n/a	n/a
49	MAZ	chr19:20958873-20959517	GM12878	blood:	n/a	chr19:20958999-20959009
50	SP1	chr19:20958819-20959373	GM12878	blood:	n/a	chr19:20959000-20959012 chr19:20958997-20959011 chr19:20959002-20959011 chr19:20959000-20959012 chr19:20959020-20959041 chr19:20959000-20959011 chr19:20959001-20959010

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:20957022..20960457-chr19:20966415..20968798,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF85-7	chr19:20957538-20959081	l_1659_chr19:20946829-20959081_testes

Variant related genes	Relation type
ZNF66	TF binding region
ENSG00000269040	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10402167	0.84[AMR][1000 genomes]
rs10403149	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10410691	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416711	0.84[AMR][1000 genomes]
rs12104173	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12459034	0.80[AMR][1000 genomes]
rs12461449	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12461983	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13345634	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13346227	0.84[AMR][1000 genomes]
rs28794771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4026920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4808270	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4808271	0.80[AMR][1000 genomes]
rs4809115	0.80[AMR][1000 genomes]
rs59303701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
2	nsv530804	chr19:20574295-21001349	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1065039	chr19:20818886-20977326	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2751781	chr19:20818886-20985425	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv578921	chr19:20818886-20985425	ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv458510	chr19:20818886-20987550	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv578910	chr19:20818886-20987550	Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv578917	chr19:20818886-20989873	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv578918	chr19:20818886-21008212	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv3447275	chr19:20818886-21030779	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
14	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv1061771	chr19:20845947-20965419	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1056879	chr19:20845947-20973432	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1058458	chr19:20845947-20975268	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv1067183	chr19:20845947-20975268	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1055911	chr19:20845947-20977326	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1059582	chr19:20845947-20977326	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv1064916	chr19:20845947-20977326	Weak transcription Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv1065495	chr19:20845947-20977326	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv1067256	chr19:20845947-20980301	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	esv2830042	chr19:20845947-20980958	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv458513	chr19:20845947-20980958	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv578929	chr19:20845947-20980958	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1063556	chr19:20845947-20981129	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv1065960	chr19:20845947-20981129	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv578930	chr19:20845947-20982627	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
30	esv2751782	chr19:20845947-20985460	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
31	nsv1066747	chr19:20845947-20985924	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
32	nsv1060429	chr19:20845947-20986303	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	nsv1060579	chr19:20845947-20986303	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	nsv1061028	chr19:20845947-20986303	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv1061596	chr19:20845947-20986303	Active TSS Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
36	nsv1062051	chr19:20845947-20986303	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	nsv1063760	chr19:20845947-20986303	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
38	nsv1066131	chr19:20845947-20986303	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
39	esv3693420	chr19:20845947-20987550	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
40	nsv517256	chr19:20845947-20987550	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
41	nsv458514	chr19:20845947-20987550	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
42	nsv458515	chr19:20845947-20987550	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
43	nsv458516	chr19:20845947-20987550	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
44	nsv458517	chr19:20845947-20987550	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv458519	chr19:20845947-20987550	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	nsv458520	chr19:20845947-20987550	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
47	nsv458521	chr19:20845947-20987550	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
48	nsv458522	chr19:20845947-20987550	Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv458523	chr19:20845947-20987550	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv578923	chr19:20845947-20987550	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20952200-20959000	Weak transcription	Pancreas	Pancrea
2	chr19:20958600-20960000	Active TSS	Primary T cells from cord blood	blood
3	chr19:20958800-20959000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr19:20958800-20959000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:20958800-20959000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr19:20958800-20959000	Enhancers	Stomach Smooth Muscle	stomach
7	chr19:20958800-20959000	Flanking Active TSS	Dnd41	blood
8	chr19:20958800-20959200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:20958800-20959200	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr19:20958800-20959400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:20958800-20959600	Active TSS	Primary B cells from cord blood	blood
12	chr19:20958800-20959600	Active TSS	Fetal Muscle Trunk	muscle
13	chr19:20958800-20959800	Active TSS	Primary monocytes fromperipheralblood	blood
14	chr19:20958800-20959800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr19:20958800-20959800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr19:20958800-20959800	Active TSS	Gastric	stomach
17	chr19:20958800-20960000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr19:20958800-20960000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:20958800-20960000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:20958800-20960000	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr19:20958800-20960000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr19:20958800-20960000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr19:20958800-20960000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr19:20958800-20960000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:20958800-20960000	Active TSS	Brain Angular Gyrus	brain
26	chr19:20958800-20960000	Active TSS	Brain Anterior Caudate	brain
27	chr19:20958800-20960000	Active TSS	Brain Cingulate Gyrus	brain
28	chr19:20958800-20960000	Active TSS	Brain Hippocampus Middle	brain
29	chr19:20958800-20960000	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr19:20958800-20960000	Active TSS	Duodenum Mucosa	Duodenum
31	chr19:20958800-20960000	Active TSS	Fetal Lung	lung
32	chr19:20958800-20960000	Active TSS	HSMM	muscle
33	chr19:20958800-20960000	Active TSS	NHEK	skin
34	chr19:20958800-20960200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:20958800-20960200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr19:20958800-20960200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:20958800-20960200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:20958800-20960200	Active TSS	Brain Germinal Matrix	brain
39	chr19:20958800-20960200	Active TSS	Fetal Kidney	kidney
40	chr19:20958800-20960200	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr19:20958800-20960200	Active TSS	Thymus	Thymus
42	chr19:20958800-20960200	Active TSS	NH-A	brain
43	chr19:20958800-20960200	Active TSS	NHLF	lung
44	chr19:20958800-20960200	Active TSS	Osteobl	bone
45	chr19:20958800-20960400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:20958800-20960400	Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links