Variant report

Variant	rs10411442
Chromosome Location	chr19:51556333-51556334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10403436	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10416060	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10418724	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1404318	1.00[JPT][hapmap]
rs1404319	1.00[JPT][hapmap]
rs1404320	1.00[JPT][hapmap]
rs17658754	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2691240	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4575635	1.00[JPT][hapmap]
rs8110488	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8111207	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8111658	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51551000-51556400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr19:51552000-51556400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:51552000-51556600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr19:51555800-51567800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:51556000-51556400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr19:51556000-51559600	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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