Variant report

Variant	rs10412210
Chromosome Location	chr19:41664811-41664812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11667708	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1645684	0.81[ASN][1000 genomes]
rs1709123	0.81[ASN][1000 genomes]
rs305957	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs305959	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4802109	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv911767	chr19:41649516-41716271	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41656400-41665000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:41661000-41665000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr19:41662600-41678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:41662800-41665000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:41662800-41665000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr19:41663400-41665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:41663400-41668000	Enhancers	Fetal Intestine Large	intestine
8	chr19:41663600-41665000	Weak transcription	Gastric	stomach
9	chr19:41663800-41665000	Enhancers	Hela-S3	cervix
10	chr19:41663800-41666600	Enhancers	Fetal Intestine Small	intestine
11	chr19:41664200-41675600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:41664400-41665000	Enhancers	HepG2	liver
13	chr19:41664400-41666000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr19:41664600-41665000	Enhancers	K562	blood
15	chr19:41664600-41666600	Enhancers	Stomach Mucosa	stomach
16	chr19:41664800-41665000	Enhancers	A549	lung
17	chr19:41664800-41665800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links