Variant report

Variant	rs4802109
Chromosome Location	chr19:41663973-41663974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10412210	0.81[ASN][1000 genomes]
rs10424975	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11667708	0.82[ASN][1000 genomes]
rs1645683	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1645684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1709123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs305957	0.80[ASN][1000 genomes]
rs305959	0.80[ASN][1000 genomes]
rs305960	0.95[ASN][1000 genomes]
rs305962	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv911767	chr19:41649516-41716271	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41656400-41665000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:41661000-41665000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr19:41662600-41678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:41662800-41665000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:41662800-41665000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr19:41663400-41665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:41663400-41668000	Enhancers	Fetal Intestine Large	intestine
8	chr19:41663600-41665000	Weak transcription	Gastric	stomach
9	chr19:41663800-41665000	Enhancers	Hela-S3	cervix
10	chr19:41663800-41666600	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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