Variant report

Variant	rs10413190
Chromosome Location	chr19:35410517-35410518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10408036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414439	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10422393	0.88[AFR][1000 genomes]
rs13344012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969952	1.00[AMR][1000 genomes]
rs58336048	1.00[AMR][1000 genomes]
rs61560072	1.00[AMR][1000 genomes]
rs7248905	1.00[AFR][1000 genomes]
rs7253720	0.94[AFR][1000 genomes]
rs8110719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057673	chr19:35343922-35542878	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv543992	chr19:35343922-35542878	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35406600-35417200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr19:35408600-35412400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:35409400-35417000	Weak transcription	Brain Hippocampus Middle	brain
4	chr19:35410000-35411000	ZNF genes & repeats	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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