Variant report

Variant	rs10414439
Chromosome Location	chr19:35429202-35429203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35426874..35429386-chr19:35431527..35435380,4	MCF-7	breast:
2	chr19:35423063..35424664-chr19:35427909..35429674,2	MCF-7	breast:
3	chr19:35429093..35431184-chr19:35432292..35434362,2	K562	blood:

Variant related genes	Relation type
ENSG00000168661	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10408036	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10413190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10422393	0.88[AFR][1000 genomes]
rs13344012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969952	1.00[AMR][1000 genomes]
rs58336048	1.00[AMR][1000 genomes]
rs61560072	1.00[AMR][1000 genomes]
rs7248905	0.88[AFR][1000 genomes]
rs7253720	0.94[AFR][1000 genomes]
rs8110719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057673	chr19:35343922-35542878	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv543992	chr19:35343922-35542878	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35418400-35429600	Weak transcription	Gastric	stomach
2	chr19:35418400-35434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:35418400-35434600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:35418600-35434200	Weak transcription	Fetal Thymus	thymus
5	chr19:35418600-35434400	Weak transcription	Colonic Mucosa	Colon
6	chr19:35418600-35434600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:35418800-35430400	Weak transcription	Hela-S3	cervix
8	chr19:35418800-35434200	Weak transcription	Colon Smooth Muscle	Colon
9	chr19:35418800-35441400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:35419000-35429600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:35419000-35431000	Weak transcription	Dnd41	blood
12	chr19:35419000-35432800	Weak transcription	Psoas Muscle	Psoas
13	chr19:35419000-35433400	Weak transcription	NH-A	brain
14	chr19:35419000-35433600	Weak transcription	NHLF	lung
15	chr19:35419000-35434200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr19:35419000-35434200	Weak transcription	Fetal Heart	heart
17	chr19:35419000-35434200	Weak transcription	Stomach Mucosa	stomach
18	chr19:35419000-35434400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr19:35420400-35430600	Strong transcription	Fetal Intestine Large	intestine
20	chr19:35420800-35430000	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr19:35421200-35430600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr19:35422800-35434200	Weak transcription	Fetal Kidney	kidney
23	chr19:35423600-35430600	Strong transcription	Fetal Stomach	stomach
24	chr19:35423600-35433200	Weak transcription	Ovary	ovary
25	chr19:35423600-35433400	Weak transcription	Osteobl	bone
26	chr19:35424400-35434200	Weak transcription	Right Ventricle	heart
27	chr19:35424600-35453000	ZNF genes & repeats	Liver	Liver
28	chr19:35424800-35434400	Weak transcription	Thymus	Thymus
29	chr19:35425000-35452200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:35425200-35429400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:35425200-35432600	Weak transcription	HSMM	muscle
32	chr19:35425200-35434000	Weak transcription	Fetal Brain Male	brain
33	chr19:35425200-35434200	Weak transcription	Brain Substantia Nigra	brain
34	chr19:35425200-35434800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:35425400-35430800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr19:35425400-35434000	Weak transcription	HepG2	liver
37	chr19:35425600-35431000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr19:35425800-35429600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr19:35425800-35432200	Weak transcription	Primary B cells from cord blood	blood
40	chr19:35425800-35432800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:35426000-35429400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:35426200-35430000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr19:35426400-35429400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr19:35426400-35433600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr19:35426600-35429600	Weak transcription	Esophagus	oesophagus
46	chr19:35426600-35432400	Weak transcription	Fetal Lung	lung
47	chr19:35426800-35433400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr19:35427200-35434200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr19:35427400-35430600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr19:35427400-35431000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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