Variant report

Variant	rs10413237
Chromosome Location	chr19:18548249-18548250
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:18548100-18548250	SK-N-SH_RA	brain:	n/a	n/a
2	SIN3AK20	chr19:18547383-18548261	K562	blood:	n/a	n/a
3	POLR2A	chr19:18538551-18551124	K562	blood:	n/a	n/a
4	CTCF	chr19:18548200-18548350	GM12870	blood:	n/a	chr19:18548329-18548342 chr19:18548327-18548345
5	CTCF	chr19:18548140-18548290	HPAF	blood vessel:	n/a	n/a
6	CTCF	chr19:18548140-18548290	GM12865	blood:	n/a	n/a
7	CTCF	chr19:18548120-18548270	GM12875	blood:	n/a	n/a
8	MAX	chr19:18547277-18548980	H1-hESC	embryonic stem cell:	n/a	chr19:18548349-18548359 chr19:18548398-18548408
9	POLR2A	chr19:18544696-18549949	PFSK-1	brain:	n/a	n/a
10	SP1	chr19:18547757-18548304	A549	lung:	n/a	chr19:18548292-18548302 chr19:18547947-18547957 chr19:18548067-18548079 chr19:18547999-18548011 chr19:18548173-18548183 chr19:18548174-18548183 chr19:18547947-18547957 chr19:18548000-18548009 chr19:18548291-18548303 chr19:18548097-18548109 chr19:18548173-18548187 chr19:18548069-18548078 chr19:18548172-18548184 chr19:18548291-18548303 chr19:18548000-18548009 chr19:18548098-18548107 chr19:18548173-18548183 chr19:18548172-18548184 chr19:18548000-18548010 chr19:18548173-18548182 chr19:18548068-18548077 chr19:18547999-18548011 chr19:18548293-18548302 chr19:18547761-18547774 chr19:18548173-18548182 chr19:18548097-18548109 chr19:18548001-18548010 chr19:18548067-18548079
11	CBX3	chr19:18547663-18548259	K562	blood:	n/a	n/a
12	POLR2A	chr19:18534926-18553479	K562	blood:	n/a	n/a
13	EGR1	chr19:18547802-18548579	K562	blood:	n/a	chr19:18548344-18548359 chr19:18548344-18548358 chr19:18548173-18548183 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548346-18548355 chr19:18548345-18548358 chr19:18548398-18548408 chr19:18548326-18548336 chr19:18548395-18548409 chr19:18548345-18548355
14	CTCF	chr19:18548120-18548270	HFF	foreskin:	n/a	n/a
15	CTCF	chr19:18548140-18548290	HEEpiC	esophagus:	n/a	n/a
16	GABPA	chr19:18547746-18548973	K562	blood:	n/a	chr19:18548350-18548359 chr19:18548327-18548336 chr19:18548174-18548183
17	PBX3	chr19:18547535-18549107	SK-N-SH	brain:	n/a	n/a
18	MAZ	chr19:18547870-18548430	GM12878	blood:	n/a	chr19:18548349-18548359 chr19:18548398-18548408
19	CTCF	chr19:18548160-18548310	K562	blood:	n/a	n/a
20	EGR1	chr19:18547668-18548649	K562	blood:	n/a	chr19:18548344-18548359 chr19:18548344-18548358 chr19:18548173-18548183 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548346-18548355 chr19:18548345-18548358 chr19:18547736-18547760 chr19:18548398-18548408 chr19:18548326-18548336 chr19:18548395-18548409 chr19:18548345-18548355
21	CTCF	chr19:18548120-18548270	GM12874	blood:	n/a	n/a
22	POLR2A	chr19:18547671-18548265	HCT-116	colon:	n/a	n/a
23	CTCF	chr19:18548120-18548270	HPF	lung:	n/a	n/a
24	MAX	chr19:18547499-18548294	A549	lung:	n/a	n/a
25	CTCF	chr19:18548140-18548290	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr19:18548160-18548310	HPF	lung:	n/a	n/a
27	POLR2A	chr19:18547157-18552159	K562	blood:	n/a	n/a
28	POLR2A	chr19:18543626-18552057	K562	blood:	n/a	n/a
29	EGR1	chr19:18548194-18548674	ECC-1	luminal epithelium:	n/a	chr19:18548344-18548359 chr19:18548344-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548346-18548355 chr19:18548345-18548358 chr19:18548398-18548408 chr19:18548326-18548336 chr19:18548395-18548409 chr19:18548345-18548355
30	MYC	chr19:18547470-18549827	K562	blood:	n/a	chr19:18549025-18549035 chr19:18548349-18548359 chr19:18548398-18548408
31	POLR2A	chr19:18544712-18548272	PFSK-1	brain:	n/a	n/a
32	CTCF	chr19:18548120-18548270	AG09319	gingival:	n/a	n/a
33	CTCF	chr19:18548100-18548250	HPAF	blood vessel:	n/a	n/a
34	CTCF	chr19:18548028-18548305	K562	blood:	n/a	n/a
35	NFIC	chr19:18547732-18548283	ECC-1	luminal epithelium:	n/a	n/a
36	CTCF	chr19:18548120-18548270	GM12868	blood:	n/a	n/a
37	EGR1	chr19:18548166-18548819	ECC-1	luminal epithelium:	n/a	chr19:18548344-18548359 chr19:18548344-18548358 chr19:18548173-18548183 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548346-18548355 chr19:18548345-18548358 chr19:18548398-18548408 chr19:18548326-18548336 chr19:18548395-18548409 chr19:18548345-18548355
38	MAX	chr19:18547452-18548884	K562	blood:	n/a	chr19:18548349-18548359 chr19:18548398-18548408
39	CTCF	chr19:18548100-18548250	GM12873	blood:	n/a	n/a
40	PBX3	chr19:18547765-18548292	A549	lung:	n/a	n/a
41	EGR1	chr19:18548189-18548662	MCF-7	breast:	n/a	chr19:18548344-18548359 chr19:18548344-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548345-18548358 chr19:18548346-18548355 chr19:18548345-18548358 chr19:18548398-18548408 chr19:18548326-18548336 chr19:18548395-18548409 chr19:18548345-18548355
42	CTCF	chr19:18548140-18548290	GM12864	blood:	n/a	n/a
43	TCF12	chr19:18547733-18550053	ECC-1	luminal epithelium:	n/a	chr19:18549258-18549268 chr19:18549956-18549966
44	CTCF	chr19:18548169-18548275	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr19:18548100-18548250	HRE	kidney:	n/a	n/a
46	CTCF	chr19:18548086-18548259	SK-N-SH_RA	brain:	n/a	n/a
47	MAX	chr19:18548163-18548896	MCF-7	breast:	n/a	chr19:18548349-18548359 chr19:18548398-18548408
48	EP300	chr19:18548169-18550079	ECC-1	luminal epithelium:	n/a	n/a
49	MXI1	chr19:18547477-18548835	K562	blood:	n/a	n/a
50	ZBTB7A	chr19:18547680-18550716	K562	blood:	n/a	chr19:18548801-18548809

No.	Distal block	Cell Line	Cell type
1	chr19:18391389..18392894-chr19:18547544..18549932,2	MCF-7	breast:
2	chr19:18546792..18548978-chr19:18667741..18669982,2	K562	blood:
3	chr19:18450121..18451677-chr19:18546960..18548489,2	MCF-7	breast:
4	chr19:18314746..18317215-chr19:18546753..18549806,3	K562	blood:
5	chr19:18302931..18304464-chr19:18547111..18549483,2	K562	blood:
6	chr19:18534646..18537206-chr19:18547129..18549034,2	MCF-7	breast:
7	chr19:18546771..18549506-chr19:18943551..18946783,3	K562	blood:
8	chr19:18546602..18548402-chr19:18715878..18718027,2	MCF-7	breast:
9	chr19:18388807..18393519-chr19:18545945..18551144,10	K562	blood:
10	chr19:18495466..18501669-chr19:18543275..18549976,8	K562	blood:
11	chr19:18546603..18548898-chr19:18631485..18634393,2	MCF-7	breast:
12	chr19:18495538..18497928-chr19:18546871..18549099,2	MCF-7	breast:
13	chr19:18388462..18393408-chr19:18545945..18551144,14	K562	blood:
14	chr19:18526882..18530762-chr19:18548138..18550714,4	MCF-7	breast:
15	chr19:18547378..18549702-chr19:18699788..18702900,3	K562	blood:
16	chr19:18451193..18453522-chr19:18547468..18550080,2	K562	blood:
17	chr19:18547268..18549412-chr19:18631404..18632910,2	K562	blood:

Variant related genes	Relation type
ENSG00000268199	TF binding region
ISYNA1	TF binding region
ENSG00000105656	Chromatin interaction
ENSG00000254858	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000006015	Chromatin interaction
ENSG00000264175	Chromatin interaction
ENSG00000105700	Chromatin interaction
ENSG00000006016	Chromatin interaction
ENSG00000268650	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000005007	Chromatin interaction
ENSG00000130513	Chromatin interaction
ENSG00000130517	Chromatin interaction
ENSG00000105649	Chromatin interaction
ENSG00000130511	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10164319	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10403249	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10405479	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10405636	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10408290	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10409003	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10409483	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10409505	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10411009	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10419404	0.82[EUR][1000 genomes]
rs10425982	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10427083	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1043327	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10442	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11673604	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1560118	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1560119	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1806980	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007981	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2288428	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2303695	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2303696	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303697	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2385088	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2385089	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs271621	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs271622	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs271623	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs271624	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs271626	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs271628	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs271629	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28572537	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34010330	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34053595	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34171762	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34256197	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34509804	0.81[EUR][1000 genomes]
rs34746918	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3810429	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4595905	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808133	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4808134	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4808136	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4808801	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4808804	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7249020	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7251653	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7252707	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7252848	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7253990	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7254249	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7256534	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7257932	0.86[ASN][1000 genomes]
rs7258465	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs748609	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs76194	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs76195	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8100767	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8103622	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8103660	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8105994	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8106096	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8107347	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8107351	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8107367	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8107743	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8109573	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8111708	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875396	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
2	esv3323899	chr19:18343484-18620429	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	162 gene(s)	inside rSNPs	diseases
3	nsv911274	chr19:18440942-18691942	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1057795	chr19:18453362-18883844	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv543925	chr19:18453362-18883844	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv428018	chr19:18454891-18663981	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
7	nsv911275	chr19:18484922-18586759	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
8	nsv911276	chr19:18497141-18554972	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
9	nsv911277	chr19:18520231-18552139	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	nsv1060687	chr19:18522527-18643218	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
11	nsv911278	chr19:18526536-18550276	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases
12	nsv911279	chr19:18533642-18550276	Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
13	nsv911280	chr19:18533642-18552139	Genic enhancers Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv532615	chr19:18534867-18796031	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
15	nsv482217	chr19:18545625-18548943	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10413237	SSBP4	cis	Skin Sun Exposed Lower leg	GTEx
rs10413237	SSBP4	cis	Esophagus Mucosa	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18538000-18548400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:18544400-18548600	Weak transcription	Brain Substantia Nigra	brain
3	chr19:18545200-18548400	Weak transcription	NHEK	skin
4	chr19:18545200-18570000	Weak transcription	Small Intestine	intestine
5	chr19:18547200-18549400	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr19:18547200-18549600	Enhancers	Fetal Brain Male	brain
7	chr19:18547400-18548400	Flanking Active TSS	Dnd41	blood
8	chr19:18547400-18549000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:18547400-18549000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:18547400-18549200	Active TSS	H9 Cell Line	embryonic stem cell
11	chr19:18547400-18549200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr19:18547400-18549200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr19:18547400-18549200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr19:18547400-18549200	Active TSS	Fetal Brain Female	brain
15	chr19:18547400-18549400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr19:18547400-18549400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr19:18547400-18549400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr19:18547400-18549600	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr19:18547400-18549800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr19:18547400-18549800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:18547400-18549800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:18547600-18548400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr19:18547600-18548400	Active TSS	Brain Hippocampus Middle	brain
24	chr19:18547600-18548400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr19:18547600-18548800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr19:18547600-18548800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:18547600-18549000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:18547600-18549000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:18547600-18549000	Active TSS	HepG2	liver
30	chr19:18547600-18549200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr19:18547600-18549200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr19:18547600-18549200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:18547600-18549200	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr19:18547600-18549200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr19:18547600-18549200	Active TSS	Rectal Smooth Muscle	rectum
36	chr19:18547600-18549200	Active TSS	A549	lung
37	chr19:18547600-18549200	Active TSS	K562	blood
38	chr19:18547600-18549400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr19:18547600-18549400	Transcr. at gene 5' and 3'	Right Atrium	heart
40	chr19:18547600-18550000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:18547800-18548400	Active TSS	Stomach Smooth Muscle	stomach
42	chr19:18547800-18548600	Active TSS	Primary hematopoietic stem cells	blood
43	chr19:18547800-18548600	Active TSS	Brain Angular Gyrus	brain
44	chr19:18547800-18548600	Active TSS	Left Ventricle	heart
45	chr19:18547800-18548600	Active TSS	Pancreas	Pancrea
46	chr19:18547800-18548600	Active TSS	Psoas Muscle	Psoas
47	chr19:18547800-18548800	Active TSS	Primary T cells from cord blood	blood
48	chr19:18547800-18548800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr19:18547800-18548800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr19:18547800-18548800	Active TSS	Fetal Kidney	kidney

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