Variant report

Variant	rs10414363
Chromosome Location	chr19:55704334-55704335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:55694739..55698576-chr19:55700961..55704975,5	K562	blood:
2	chr19:55703326..55704959-chr19:55706787..55709539,2	K562	blood:
3	chr19:55703160..55704959-chr19:55706787..55709359,2	K562	blood:
4	chr19:55703531..55706099-chr19:55709723..55712507,2	K562	blood:
5	chr19:55703436..55706560-chr19:55709695..55713857,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BRSK1-3	chr19:55704184-55704619	NONHSAT068003

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10412231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10416615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11880446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12104357	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692000-55707800	Weak transcription	K562	blood
5	chr19:55692200-55710000	Weak transcription	Pancreas	Pancrea
6	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr19:55697200-55705000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr19:55697600-55705000	Weak transcription	HepG2	liver
9	chr19:55697600-55708200	Weak transcription	Stomach Mucosa	stomach
10	chr19:55698000-55705000	Weak transcription	Colonic Mucosa	Colon
11	chr19:55701200-55718000	Weak transcription	A549	lung
12	chr19:55701400-55711600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr19:55701400-55718400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:55702600-55714800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr19:55702800-55706200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:55702800-55713400	Weak transcription	Small Intestine	intestine
17	chr19:55703000-55707800	Weak transcription	Gastric	stomach
18	chr19:55703000-55717800	Weak transcription	Hela-S3	cervix
19	chr19:55703200-55706200	Weak transcription	Spleen	Spleen
20	chr19:55703200-55711400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:55703400-55704800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:55703400-55705600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr19:55703600-55704400	Weak transcription	Fetal Intestine Large	intestine
24	chr19:55704200-55718200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links