The 2.0 version of rSNPBase

Variant report

Variant rs11880446
Chromosome Location chr19:55700230-55700231
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:55691200-55718200 Weak transcription Right Atrium heart
2 chr19:55691600-55718200 Weak transcription Placenta Amnion Placenta Amnion
3 chr19:55691800-55717600 Strong transcription Fetal Intestine Small intestine
4 chr19:55692000-55707800 Weak transcription K562 blood
5 chr19:55692200-55710000 Weak transcription Pancreas Pancrea
6 chr19:55692600-55701200 Strong transcription Fetal Adrenal Gland Adrenal Gland
7 chr19:55692600-55717000 Strong transcription Duodenum Mucosa Duodenum
8 chr19:55693000-55702800 Weak transcription Fetal Intestine Large intestine
9 chr19:55694600-55702200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr19:55696400-55702600 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr19:55697200-55705000 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr19:55697400-55702600 Weak transcription Gastric stomach
13 chr19:55697600-55705000 Weak transcription HepG2 liver
14 chr19:55697600-55708200 Weak transcription Stomach Mucosa stomach
15 chr19:55698000-55705000 Weak transcription Colonic Mucosa Colon
16 chr19:55698200-55702600 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr19:55699000-55700800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr19:55699600-55701000 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr19:55699800-55700600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr19:55699800-55700800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
21 chr19:55700000-55700400 Enhancers Primary monocytes fromperipheralblood blood
22 chr19:55700000-55700400 Bivalent Enhancer Primary T cells fromperipheralblood blood
23 chr19:55700000-55700400 Flanking Active TSS Primary hematopoietic stem cells blood
24 chr19:55700000-55700400 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr19:55700000-55700400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr19:55700000-55700600 Flanking Active TSS NHEK skin
27 chr19:55700000-55701000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr19:55700000-55701200 Enhancers Spleen Spleen
29 chr19:55700000-55701400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr19:55700000-55701400 Flanking Active TSS Hela-S3 cervix
31 chr19:55700000-55701400 Enhancers HMEC breast
32 chr19:55700000-55701400 Enhancers HUVEC blood vessel
33 chr19:55700200-55700400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
34 chr19:55700200-55700400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr19:55700200-55700400 Flanking Active TSS A549 lung
36 chr19:55700200-55700400 Flanking Active TSS Osteobl bone
37 chr19:55700200-55700800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
38 chr19:55700200-55700800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr19:55700200-55701200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr19:55700200-55701400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr19:55700200-55701400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015