Variant report

Variant	rs10414612
Chromosome Location	chr19:41660464-41660465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10420493	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10421210	0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs16959007	1.00[TSI][hapmap]
rs16975124	1.00[TSI][hapmap]
rs16975164	1.00[TSI][hapmap]
rs2217656	1.00[TSI][hapmap]
rs56221133	1.00[EUR][1000 genomes]
rs56699599	1.00[EUR][1000 genomes]
rs7249554	1.00[TSI][hapmap]
rs73931437	1.00[EUR][1000 genomes]
rs747857	1.00[TSI][hapmap]
rs8105815	0.90[CHB][hapmap]
rs998468	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv911767	chr19:41649516-41716271	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41656400-41665000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:41656600-41662000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr19:41660400-41660800	Flanking Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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