Variant report

Variant	rs10421210
Chromosome Location	chr19:41661177-41661178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10414612	0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs10420493	0.86[ASN][1000 genomes]
rs10469283	0.83[ASN][1000 genomes]
rs4802110	0.83[ASN][1000 genomes]
rs4803440	0.81[ASN][1000 genomes]
rs4803441	0.81[ASN][1000 genomes]
rs4803442	0.81[ASN][1000 genomes]
rs4803443	0.83[ASN][1000 genomes]
rs56221133	0.90[ASN][1000 genomes]
rs56699599	0.90[ASN][1000 genomes]
rs56942707	0.83[ASN][1000 genomes]
rs58716442	0.83[ASN][1000 genomes]
rs61154238	0.83[ASN][1000 genomes]
rs73931437	0.84[ASN][1000 genomes]
rs8100794	0.81[ASN][1000 genomes]
rs8105815	0.86[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv911767	chr19:41649516-41716271	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41656400-41665000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:41656600-41662000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr19:41660800-41661400	Enhancers	Hela-S3	cervix
4	chr19:41661000-41665000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links