Variant report

Variant	rs10415636
Chromosome Location	chr19:19497585-19497586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19494550..19497983-chr19:19513188..19518336,8	MCF-7	breast:
2	chr19:19496697..19498287-chr19:19583016..19585062,2	MCF-7	breast:
3	chr19:18390819..18392505-chr19:19495105..19497896,2	K562	blood:
4	chr19:19494732..19500297-chr19:19512585..19520288,14	MCF-7	breast:
5	chr19:19491673..19504307-chr19:19513999..19523684,33	K562	blood:
6	chr19:19494923..19497823-chr19:19573798..19576950,3	K562	blood:
7	chr19:19497521..19500034-chr19:19556713..19558858,2	K562	blood:
8	chr19:19303809..19306527-chr19:19495529..19497596,2	K562	blood:
9	chr19:19303122..19305309-chr19:19496096..19498095,2	K562	blood:
10	chr19:19496792..19497635-chr5:177631182..177631713,2	Hela-S3	cervix:
11	chr19:19497354..19499230-chr19:19547808..19549334,2	K562	blood:
12	chr19:19496290..19497914-chr19:19774313..19776411,2	MCF-7	breast:
13	chr19:19492268..19501550-chr19:19512499..19523684,29	K562	blood:
14	chr19:19478626..19479419-chr19:19497318..19497870,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267234	Chromatin interaction
ENSG00000197451	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000064490	Chromatin interaction
ENSG00000105726	Chromatin interaction
ENSG00000167491	Chromatin interaction
ENSG00000254901	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10404351	0.87[AFR][1000 genomes]
rs10423185	0.87[AFR][1000 genomes]
rs10425902	0.83[AFR][1000 genomes]
rs10426883	0.87[AFR][1000 genomes]
rs28417171	0.96[AFR][1000 genomes]
rs8111835	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1056419	chr19:19421218-19510611	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19495200-19497600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:19495400-19497800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr19:19495400-19498200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr19:19495400-19498400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr19:19495600-19497600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:19495600-19497600	Active TSS	Ovary	ovary
7	chr19:19495600-19497600	Active TSS	Small Intestine	intestine
8	chr19:19495600-19497800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr19:19495600-19497800	Active TSS	HSMM	muscle
10	chr19:19495600-19498000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr19:19495600-19498000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr19:19495800-19497600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr19:19495800-19497600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:19495800-19497600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr19:19495800-19497600	Active TSS	Left Ventricle	heart
16	chr19:19495800-19497600	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr19:19495800-19497600	Active TSS	A549	lung
18	chr19:19495800-19497800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:19495800-19497800	Active TSS	Aorta	Aorta
20	chr19:19495800-19497800	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr19:19495800-19497800	Active TSS	Fetal Kidney	kidney
22	chr19:19495800-19497800	Active TSS	Placenta Amnion	Placenta Amnion
23	chr19:19495800-19498000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr19:19495800-19498000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr19:19496000-19497600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr19:19496000-19497600	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr19:19496000-19497600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:19496000-19497600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr19:19496000-19497600	Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr19:19496000-19497600	Active TSS	K562	blood
31	chr19:19496000-19497600	Active TSS	Osteobl	bone
32	chr19:19496000-19497800	Active TSS	GM12878-XiMat	blood
33	chr19:19496000-19497800	Active TSS	NHDF-Ad	bronchial
34	chr19:19496200-19497600	Active TSS	Muscle Satellite Cultured Cells	--
35	chr19:19496200-19497600	Active TSS	Hela-S3	cervix
36	chr19:19496200-19497600	Active TSS	HepG2	liver
37	chr19:19496200-19497600	Active TSS	HMEC	breast
38	chr19:19496200-19497600	Active TSS	NH-A	brain
39	chr19:19496200-19498000	Active TSS	Lung	lung
40	chr19:19496800-19498400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr19:19497000-19497600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr19:19497000-19497800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr19:19497000-19497800	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr19:19497000-19497800	Flanking Active TSS	Fetal Muscle Trunk	muscle
45	chr19:19497000-19498000	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr19:19497000-19498000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:19497000-19498000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr19:19497000-19498000	Enhancers	Fetal Brain Male	brain
49	chr19:19497000-19498000	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr19:19497000-19498000	Flanking Active TSS	Placenta	Placenta

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