Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10401497	0.83[AMR][1000 genomes]
rs10403702	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407793	0.83[AMR][1000 genomes]
rs10410370	0.83[AMR][1000 genomes]
rs10415701	0.83[AMR][1000 genomes]
rs10415895	0.83[AMR][1000 genomes]
rs10416827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419752	0.83[AMR][1000 genomes]
rs10425882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10426738	0.83[AMR][1000 genomes]
rs10427144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973535	1.00[EUR][1000 genomes]
rs1860133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28813130	1.00[EUR][1000 genomes]
rs58247839	1.00[EUR][1000 genomes]
rs58824692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59933428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7248592	1.00[EUR][1000 genomes]
rs73555856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8109558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40114800-40121800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:40115200-40120400	Weak transcription	Placenta	Placenta

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