Variant report
| Variant | rs10427144 |
|---|---|
| Chromosome Location | chr19:40120309-40120310 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10401497 | 0.83[AMR][1000 genomes] |
| rs10403702 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10407793 | 0.83[AMR][1000 genomes] |
| rs10410370 | 0.83[AMR][1000 genomes] |
| rs10415701 | 0.83[AMR][1000 genomes] |
| rs10415895 | 0.83[AMR][1000 genomes] |
| rs10416827 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10418622 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10419752 | 0.83[AMR][1000 genomes] |
| rs10425882 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10426738 | 0.83[AMR][1000 genomes] |
| rs16973535 | 1.00[EUR][1000 genomes] |
| rs1860133 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2108390 | 0.80[AFR][1000 genomes] |
| rs2354229 | 0.80[AFR][1000 genomes] |
| rs28813130 | 1.00[EUR][1000 genomes] |
| rs3842958 | 0.80[AFR][1000 genomes] |
| rs58247839 | 1.00[EUR][1000 genomes] |
| rs58824692 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59933428 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7248592 | 1.00[EUR][1000 genomes] |
| rs73555856 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555863 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8109558 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs886843 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv579509 | chr19:40004640-40133438 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | esv34120 | chr19:40044635-40131820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:40114800-40121800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr19:40115200-40120400 | Weak transcription | Placenta | Placenta |
