Variant report

Variant	rs10419232
Chromosome Location	chr19:18404148-18404149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18402879..18404490-chr19:18483382..18485469,2	K562	blood:
2	chr19:18283000..18284666-chr19:18403013..18404527,2	K562	blood:
3	chr19:18404019..18405840-chr19:18495699..18498623,2	K562	blood:
4	chr19:679966..680526-chr19:18403602..18404571,2	Hela-S3	cervix:
5	chr19:18402179..18405355-chr19:18483969..18486713,5	K562	blood:
6	chr19:18401578..18404276-chr19:18423557..18426532,3	MCF-7	breast:
7	chr19:18403869..18405771-chr19:18450788..18452499,2	MCF-7	breast:
8	chr19:18302170..18305660-chr19:18401195..18405858,4	K562	blood:
9	chr1:185285767..185286450-chr19:18403581..18404468,2	Hela-S3	cervix:
10	chr19:18399894..18406849-chr19:18524216..18528146,7	K562	blood:
11	chr19:18401356..18404646-chr19:18426877..18430398,3	MCF-7	breast:
12	chr19:18401829..18404172-chr19:18534025..18536659,2	K562	blood:
13	chr19:18219734..18221957-chr19:18401756..18404165,2	K562	blood:
14	chr19:18403506..18405273-chr19:18495493..18497035,2	MCF-7	breast:
15	chr19:18403785..18405926-chr21:38617800..38619973,2	K562	blood:
16	chr16:31191417..31192171-chr19:18403741..18404517,2	Hela-S3	cervix:
17	chr19:18383365..18408325-chr19:18518460..18533256,66	K562	blood:
18	chr19:18401391..18404924-chr19:18547602..18550007,3	K562	blood:
19	chr19:18399345..18407720-chr19:18430417..18436364,18	MCF-7	breast:
20	chr19:18401957..18405099-chr19:18441028..18445565,5	MCF-7	breast:
21	chr19:18319878..18322618-chr19:18403582..18405708,2	K562	blood:
22	chr19:18391866..18392862-chr19:18402555..18404386,6	Hela-S3	cervix:
23	chr19:18401371..18405274-chr19:18416257..18419267,5	MCF-7	breast:
24	chr19:18404019..18405946-chr19:18496995..18498623,2	K562	blood:
25	chr19:18402236..18405343-chr19:18407767..18411691,5	MCF-7	breast:
26	chr19:18392200..18392869-chr19:18403826..18404373,3	MCF-7	breast:
27	chr19:18392200..18393137-chr19:18403826..18404739,2	MCF-7	breast:
28	chr15:65587972..65588859-chr19:18403872..18404756,2	Hela-S3	cervix:
29	chr19:18402536..18404490-chr19:18452623..18454131,2	MCF-7	breast:
30	chr19:18401679..18404402-chr19:18698590..18700226,2	K562	blood:
31	chr19:18402934..18404440-chr19:18413861..18416059,2	MCF-7	breast:
32	chr19:18351413..18353235-chr19:18403672..18406374,2	K562	blood:
33	chr19:18403797..18404346-chr6:49430498..49431216,2	Hela-S3	cervix:
34	chr19:18283000..18284595-chr19:18402682..18404527,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000267959	Chromatin interaction
ENSG00000070404	Chromatin interaction
ENSG00000105655	Chromatin interaction
ENSG00000264175	Chromatin interaction
ENSG00000254858	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000130513	Chromatin interaction
ENSG00000130520	Chromatin interaction
ENSG00000216490	Chromatin interaction
ENSG00000006015	Chromatin interaction
ENSG00000130511	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000239821	Chromatin interaction
ENSG00000221167	Chromatin interaction
ENSG00000130517	Chromatin interaction
ENSG00000099308	Chromatin interaction
ENSG00000031691	Chromatin interaction
ENSG00000116679	Chromatin interaction
ENSG00000146085	Chromatin interaction
ENSG00000199568	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10424974	0.90[ASN][1000 genomes]
rs16982288	0.84[CHB][hapmap]
rs16982301	0.80[ASN][1000 genomes]
rs41374444	0.88[EUR][1000 genomes]
rs56123634	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57734410	0.83[EUR][1000 genomes]
rs57934386	0.84[EUR][1000 genomes]
rs58997823	0.81[EUR][1000 genomes]
rs59783649	0.84[EUR][1000 genomes]
rs6512255	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7254275	1.00[CHB][hapmap]
rs73005418	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
2	nsv911251	chr19:18224729-18422364	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv911253	chr19:18240127-18418044	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv916325	chr19:18244780-18534927	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
5	esv3323899	chr19:18343484-18620429	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	162 gene(s)	inside rSNPs	diseases
6	nsv911269	chr19:18351674-18418044	Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
7	nsv911270	chr19:18351674-18422364	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
8	nsv911271	chr19:18362940-18453124	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	135 gene(s)	inside rSNPs	diseases
9	esv1833305	chr19:18378219-18408222	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	117 gene(s)	inside rSNPs	diseases
10	nsv911272	chr19:18378219-18439383	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	135 gene(s)	inside rSNPs	diseases
11	nsv911273	chr19:18386798-18454825	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	134 gene(s)	inside rSNPs	diseases
12	esv3442194	chr19:18403852-18408550	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18400600-18404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:18400800-18404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:18402000-18404200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr19:18402000-18404200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr19:18402000-18404200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:18402000-18404200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:18402000-18404200	Flanking Active TSS	Fetal Intestine Small	intestine
8	chr19:18402000-18404400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr19:18402000-18404400	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr19:18402000-18404400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr19:18402000-18404400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr19:18402000-18404400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr19:18402000-18404400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr19:18402000-18404400	Flanking Active TSS	Fetal Muscle Trunk	muscle
15	chr19:18402000-18404400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr19:18402000-18404600	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr19:18402000-18404600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr19:18402000-18404600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr19:18402000-18404800	Flanking Active TSS	Colonic Mucosa	Colon
20	chr19:18402000-18405800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr19:18402000-18405800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:18402200-18404200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr19:18402200-18404200	Active TSS	Aorta	Aorta
24	chr19:18402200-18404200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr19:18402200-18404200	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr19:18402200-18404200	Active TSS	Ovary	ovary
27	chr19:18402200-18404200	Active TSS	Right Atrium	heart
28	chr19:18402200-18404200	Active TSS	Right Ventricle	heart
29	chr19:18402200-18404400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:18402200-18404400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:18402200-18404400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:18402400-18404400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:18402400-18404400	Active TSS	Fetal Kidney	kidney
34	chr19:18402400-18404400	Flanking Active TSS	Osteobl	bone
35	chr19:18402600-18404200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:18402600-18404200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:18402600-18404200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr19:18402600-18404400	Flanking Active TSS	Liver	Liver
39	chr19:18402600-18404400	Flanking Active TSS	HUVEC	blood vessel
40	chr19:18402600-18404400	Flanking Active TSS	NH-A	brain
41	chr19:18402600-18404600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr19:18402800-18404200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:18402800-18404600	Flanking Active TSS	NHLF	lung
44	chr19:18403200-18404200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr19:18403200-18404200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr19:18403200-18404200	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr19:18403200-18404200	Flanking Active TSS	Stomach Mucosa	stomach
48	chr19:18403200-18404200	Flanking Active TSS	HSMM	muscle
49	chr19:18403200-18404400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr19:18403200-18404400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links