Variant report

Variant	rs10419392
Chromosome Location	chr19:44306956-44306957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:44306947-44306997	PrEC	prostate:	n/a
2	chr19:44306947-44306997	PANC-1	pancreas:	n/a
3	chr19:44306947-44306997	HRE	kidney:	n/a
4	chr19:44306947-44306997	HNPCEpiC	eye:	n/a
5	chr19:44306947-44306997	NB4	blood:	n/a
6	chr19:44306947-44306997	GM12878	blood:	n/a
7	chr19:44306947-44306997	NHDF-neo	bronchial:	n/a
8	chr19:44306947-44306997	HIPEpiC	eye:	n/a
9	chr19:44306947-44306997	HEK293	kidney:	embryo
10	chr19:44306947-44306997	Caco-2	colon:	n/a
11	chr19:44306947-44306997	NHBE	bronchial:	n/a
12	chr19:44306947-44306997	MCF-7	breast:	n/a
13	chr19:44306947-44306997	AG04449	skin:	fetal
14	chr19:44306947-44306997	LNCaP	prostate:	n/a
15	chr19:44306947-44306997	GM12892	blood:	n/a
16	chr19:44306947-44306997	AoSMC	blood vessel:	n/a
17	chr19:44306947-44306997	MCF10A-Er-Src	breast:	n/a
18	chr19:44306947-44306997	HMEC	breast:	n/a
19	chr19:44306947-44306997	GM19239	blood:	n/a
20	chr19:44306947-44306997	H1-hESC	embryonic stem cell:	embryo
21	chr19:44306947-44306997	HCT-116	colon:	n/a
22	chr19:44306947-44306997	HCPEpiC	choroid plexus:	n/a
23	chr19:44306947-44306997	SK-N-SH_RA	brain:	n/a
24	chr19:44306947-44306997	HRCEpiC	kidney:	n/a
25	chr19:44306947-44306997	SK-N-MC	brain:	n/a
26	chr19:44306947-44306997	HL-60	blood:	n/a
27	chr19:44306947-44306997	NT2-D1	testis:	n/a
28	chr19:44306947-44306997	AG09309	skin:	n/a
29	chr19:44306947-44306997	K562	blood:	n/a
30	chr19:44306947-44306997	HAEpiC	amniotic membrane:	n/a
31	chr19:44306947-44306997	GM12891	blood:	n/a
32	chr19:44306947-44306997	SK-N-SH	brain:	n/a
33	chr19:44306947-44306997	ECC-1	luminal epithelium:	n/a
34	chr19:44306947-44306997	AG09319	gingival:	n/a
35	chr19:44306947-44306997	NH-A	brain:	n/a
36	chr19:44306947-44306997	Hepatocyte	liver:	n/a
37	chr19:44306947-44306997	Jurkat	blood:	n/a
38	chr19:44306947-44306997	A549	lung:	n/a
39	chr19:44306947-44306997	U87	brain:	n/a
40	chr19:44306947-44306997	AG04450	lung:	fetal
41	chr19:44306947-44306997	SKMC	muscle:	n/a
42	chr19:44306947-44306997	GM06990	blood:	n/a
43	chr19:44306947-44306997	HCF	heart:	n/a
44	chr19:44306947-44306997	HRPEpiC	eye:	n/a
45	chr19:44306947-44306997	HEEpiC	esophagus:	n/a
46	chr19:44306947-44306997	RPTEC	kidney:	n/a
47	chr19:44306947-44306997	BE2_C	brain:	n/a
48	chr19:44306947-44306997	PFSK-1	brain:	n/a
49	chr19:44306947-44306997	HUVEC	blood vessel:	n/a
50	chr19:44306947-44306997	CMK	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44285151..44287673-chr19:44304698..44307522,2	K562	blood:

No data

Variant related genes	Relation type
LYPD5	CpG island
ENSG00000104783	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4525602	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44304200-44308600	Weak transcription	K562	blood
2	chr19:44304600-44309000	Weak transcription	Spleen	Spleen
3	chr19:44304600-44310200	Weak transcription	HMEC	breast
4	chr19:44304600-44310200	Weak transcription	NHEK	skin
5	chr19:44306600-44307000	Enhancers	Placenta	Placenta

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