Variant report

Variant	rs4525602
Chromosome Location	chr19:44301513-44301514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10419392	0.81[ASN][1000 genomes]
rs10422551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11083722	0.90[EUR][1000 genomes]
rs16976816	1.00[CHB][hapmap]
rs16976817	1.00[CHB][hapmap]
rs2356399	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs346049	1.00[CHB][hapmap]
rs7250952	0.81[ASN][1000 genomes]
rs7260187	0.87[ASN][1000 genomes]
rs8104645	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44289400-44302600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:44290000-44302400	Weak transcription	NHEK	skin
3	chr19:44290200-44302200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:44299000-44302000	Weak transcription	Brain Angular Gyrus	brain
5	chr19:44299600-44302200	Weak transcription	Brain Anterior Caudate	brain
6	chr19:44299600-44302400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr19:44300200-44301800	Weak transcription	Esophagus	oesophagus
8	chr19:44300800-44301600	Strong transcription	Placenta	Placenta
9	chr19:44301000-44302200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:44301200-44302000	Weak transcription	Spleen	Spleen
11	chr19:44301400-44302200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr19:44301400-44302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:44301400-44302400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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