Variant report

Variant	rs10421670
Chromosome Location	chr19:19217091-19217092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19216749..19218544-chr19:19229927..19231578,2	K562	blood:
2	chr19:19192171..19193937-chr19:19216840..19218513,2	MCF-7	breast:
3	chr19:19208308..19213964-chr19:19214081..19217541,6	K562	blood:
4	chr19:19215004..19217931-chr19:19737020..19738746,2	K562	blood:
5	chr19:19172859..19177096-chr19:19213191..19220004,7	K562	blood:
6	chr19:19029097..19030687-chr19:19216352..19218052,2	K562	blood:
7	chr19:19170465..19178046-chr19:19213939..19220242,15	K562	blood:

Variant related genes	Relation type
ENSG00000064547	Chromatin interaction
ENSG00000105671	Chromatin interaction
ENSG00000105669	Chromatin interaction
ENSG00000181035	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10402553	1.00[YRI][hapmap]
rs2228603	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19180400-19219800	Weak transcription	HSMMtube	muscle
2	chr19:19180600-19245600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr19:19180600-19248400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr19:19185400-19221200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:19194600-19229400	Weak transcription	Dnd41	blood
6	chr19:19197400-19222600	Weak transcription	GM12878-XiMat	blood
7	chr19:19203800-19245600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr19:19206600-19229600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:19208600-19221400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr19:19209000-19223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:19209400-19221000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr19:19210200-19230200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr19:19212400-19217800	Weak transcription	Primary T cells from cord blood	blood
14	chr19:19212400-19218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:19212400-19218400	Weak transcription	Brain Substantia Nigra	brain
16	chr19:19212400-19221000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:19212400-19221400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr19:19212600-19218400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:19212600-19218600	Weak transcription	Brain Hippocampus Middle	brain
20	chr19:19212600-19220600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr19:19212600-19221600	Weak transcription	Brain Angular Gyrus	brain
22	chr19:19212600-19229600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:19212600-19240800	Weak transcription	Aorta	Aorta
24	chr19:19212800-19221200	Weak transcription	Gastric	stomach
25	chr19:19213200-19218200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr19:19214000-19217600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr19:19214200-19221200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr19:19214600-19218200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr19:19215400-19220800	Strong transcription	Liver	Liver
30	chr19:19215600-19217400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:19215600-19219000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:19215800-19217200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:19215800-19217200	Active TSS	Rectal Smooth Muscle	rectum
34	chr19:19215800-19217200	Enhancers	Stomach Mucosa	stomach
35	chr19:19215800-19217200	Active TSS	A549	lung
36	chr19:19215800-19217400	Active TSS	H9 Cell Line	embryonic stem cell
37	chr19:19215800-19217400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr19:19215800-19217400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:19215800-19217400	Enhancers	Fetal Heart	heart
40	chr19:19215800-19217400	Active TSS	Fetal Kidney	kidney
41	chr19:19216000-19217200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr19:19216000-19217200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr19:19216000-19217200	Active TSS	Fetal Brain Female	brain
44	chr19:19216000-19217400	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr19:19216000-19217400	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr19:19216000-19217400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr19:19216000-19217400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:19216000-19217400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr19:19216000-19217400	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr19:19216000-19217400	Active TSS	Stomach Smooth Muscle	stomach

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