The 2.0 version of rSNPBase

Variant report

Variant rs10402553
Chromosome Location chr19:19254512-19254513
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19249200-19256600 Weak transcription Placenta Amnion Placenta Amnion
2 chr19:19249400-19256600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr19:19249400-19256800 Weak transcription Lung lung
4 chr19:19249400-19257400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr19:19249400-19259600 Weak transcription Aorta Aorta
6 chr19:19249400-19259800 Weak transcription Left Ventricle heart
7 chr19:19249400-19271200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr19:19249600-19256800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr19:19249600-19257400 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr19:19249600-19257600 Weak transcription Brain Hippocampus Middle brain
11 chr19:19249600-19258400 Weak transcription Right Atrium heart
12 chr19:19249600-19271800 Weak transcription Brain Substantia Nigra brain
13 chr19:19249600-19282600 Weak transcription NHLF lung
14 chr19:19249800-19256600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr19:19249800-19256800 Weak transcription Ovary ovary
16 chr19:19249800-19256800 Weak transcription K562 blood
17 chr19:19249800-19256800 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr19:19249800-19257200 Weak transcription GM12878-XiMat blood
19 chr19:19249800-19257400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr19:19249800-19257400 Weak transcription Colon Smooth Muscle Colon
21 chr19:19249800-19257400 Weak transcription Spleen Spleen
22 chr19:19249800-19258400 Weak transcription Dnd41 blood
23 chr19:19249800-19258800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr19:19249800-19259600 Weak transcription Primary T cells from cord blood blood
25 chr19:19249800-19259800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr19:19249800-19260000 Weak transcription Brain Anterior Caudate brain
27 chr19:19249800-19261800 Weak transcription Primary T killer naive cells fromperipheralblood blood
28 chr19:19249800-19269000 Weak transcription Brain Angular Gyrus brain
29 chr19:19249800-19271200 Weak transcription Primary hematopoietic stem cells blood
30 chr19:19249800-19280600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr19:19250000-19256600 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr19:19250000-19257400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr19:19250000-19261400 Weak transcription HepG2 liver
34 chr19:19250000-19266800 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr19:19250600-19256000 Weak transcription Primary neutrophils fromperipheralblood blood
36 chr19:19250600-19256800 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr19:19250600-19256800 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr19:19250600-19257200 Weak transcription Primary monocytes fromperipheralblood blood
39 chr19:19250600-19271800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr19:19250800-19256600 Weak transcription Primary B cells from peripheral blood blood
41 chr19:19250800-19256600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr19:19251200-19256800 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr19:19251200-19257400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr19:19251400-19256800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr19:19251600-19256200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr19:19252200-19256800 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr19:19252800-19272400 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr19:19253200-19256600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr19:19253400-19257400 Weak transcription Liver Liver
50 chr19:19253600-19265600 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015