Variant report

Variant	rs9917034
Chromosome Location	chr19:19090835-19090836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19086874..19091371-chr19:19096444..19100736,4	K562	blood:
2	chr19:19049247..19051146-chr19:19088986..19092221,3	MCF-7	breast:
3	chr19:19040948..19042506-chr19:19089154..19091282,2	MCF-7	breast:
4	chr19:19035834..19037500-chr19:19088914..19091886,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000051128	Chromatin interaction
ENSG00000269019	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10402553	1.00[EUR][1000 genomes]
rs10403808	1.00[EUR][1000 genomes]
rs10404077	1.00[EUR][1000 genomes]
rs10404860	1.00[EUR][1000 genomes]
rs10404879	1.00[EUR][1000 genomes]
rs10405178	1.00[EUR][1000 genomes]
rs10405609	1.00[EUR][1000 genomes]
rs10406282	1.00[EUR][1000 genomes]
rs10406341	1.00[EUR][1000 genomes]
rs10406496	1.00[EUR][1000 genomes]
rs10407260	1.00[EUR][1000 genomes]
rs10407980	1.00[EUR][1000 genomes]
rs10408567	1.00[EUR][1000 genomes]
rs10409395	1.00[EUR][1000 genomes]
rs10411786	1.00[EUR][1000 genomes]
rs10412101	1.00[EUR][1000 genomes]
rs10413216	1.00[EUR][1000 genomes]
rs10414535	1.00[EUR][1000 genomes]
rs10416041	1.00[EUR][1000 genomes]
rs10416054	1.00[EUR][1000 genomes]
rs10416240	1.00[EUR][1000 genomes]
rs10416250	1.00[EUR][1000 genomes]
rs10416730	1.00[EUR][1000 genomes]
rs10417310	1.00[EUR][1000 genomes]
rs10417682	1.00[EUR][1000 genomes]
rs10417995	1.00[EUR][1000 genomes]
rs10418688	1.00[EUR][1000 genomes]
rs10419114	1.00[EUR][1000 genomes]
rs10419307	1.00[EUR][1000 genomes]
rs10420479	1.00[EUR][1000 genomes]
rs10420559	1.00[EUR][1000 genomes]
rs10422058	1.00[EUR][1000 genomes]
rs10422079	1.00[EUR][1000 genomes]
rs10422813	1.00[EUR][1000 genomes]
rs10423129	1.00[EUR][1000 genomes]
rs10426131	1.00[EUR][1000 genomes]
rs13344769	1.00[EUR][1000 genomes]
rs13345246	1.00[EUR][1000 genomes]
rs28369262	1.00[EUR][1000 genomes]
rs28374656	1.00[EUR][1000 genomes]
rs28376498	1.00[EUR][1000 genomes]
rs28380085	1.00[EUR][1000 genomes]
rs28421315	1.00[EUR][1000 genomes]
rs28445835	1.00[EUR][1000 genomes]
rs28477157	1.00[EUR][1000 genomes]
rs28507927	1.00[EUR][1000 genomes]
rs28568599	1.00[EUR][1000 genomes]
rs28582808	1.00[EUR][1000 genomes]
rs28628081	1.00[EUR][1000 genomes]
rs28720008	1.00[EUR][1000 genomes]
rs35646935	1.00[EUR][1000 genomes]
rs57654710	1.00[EUR][1000 genomes]
rs6511012	1.00[EUR][1000 genomes]
rs7252085	1.00[EUR][1000 genomes]
rs7256152	1.00[EUR][1000 genomes]
rs8106189	1.00[EUR][1000 genomes]
rs9917000	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv911298	chr19:18928480-19093619	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv911300	chr19:18944025-19093619	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv833778	chr19:19012669-19201487	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv2435	chr19:19077432-19122579	Strong transcription Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19084200-19107800	Weak transcription	Right Atrium	heart
2	chr19:19087200-19091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:19089000-19091600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr19:19089800-19091400	Weak transcription	Spleen	Spleen
5	chr19:19090000-19094200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr19:19090000-19094200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr19:19090000-19094400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr19:19090200-19091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr19:19090600-19091600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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