Variant report

Variant	rs57654710
Chromosome Location	chr19:19210747-19210748
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:19209108-19211735	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19205430..19208047-chr19:19210402..19213309,3	K562	blood:
2	chr19:19208308..19213964-chr19:19214081..19217541,6	K562	blood:

Variant related genes	Relation type
SLC25A42	TF binding region
ENSG00000181035	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10402553	1.00[EUR][1000 genomes]
rs10403808	1.00[EUR][1000 genomes]
rs10404077	1.00[EUR][1000 genomes]
rs10404860	1.00[EUR][1000 genomes]
rs10404879	1.00[EUR][1000 genomes]
rs10405178	1.00[EUR][1000 genomes]
rs10405609	1.00[EUR][1000 genomes]
rs10406282	1.00[EUR][1000 genomes]
rs10406341	1.00[EUR][1000 genomes]
rs10406496	1.00[EUR][1000 genomes]
rs10407260	1.00[EUR][1000 genomes]
rs10407980	1.00[EUR][1000 genomes]
rs10408567	1.00[EUR][1000 genomes]
rs10409395	1.00[EUR][1000 genomes]
rs10411786	1.00[EUR][1000 genomes]
rs10412101	1.00[EUR][1000 genomes]
rs10413216	1.00[EUR][1000 genomes]
rs10414535	1.00[EUR][1000 genomes]
rs10416041	1.00[EUR][1000 genomes]
rs10416054	1.00[EUR][1000 genomes]
rs10416240	1.00[EUR][1000 genomes]
rs10416250	1.00[EUR][1000 genomes]
rs10416730	1.00[EUR][1000 genomes]
rs10417310	1.00[EUR][1000 genomes]
rs10417682	1.00[EUR][1000 genomes]
rs10417995	1.00[EUR][1000 genomes]
rs10418688	1.00[EUR][1000 genomes]
rs10419114	1.00[EUR][1000 genomes]
rs10419307	1.00[EUR][1000 genomes]
rs10420479	1.00[EUR][1000 genomes]
rs10420559	1.00[EUR][1000 genomes]
rs10422058	1.00[EUR][1000 genomes]
rs10422079	1.00[EUR][1000 genomes]
rs10422813	1.00[EUR][1000 genomes]
rs10423129	1.00[EUR][1000 genomes]
rs10426131	1.00[EUR][1000 genomes]
rs13344769	1.00[EUR][1000 genomes]
rs13345246	1.00[EUR][1000 genomes]
rs28369262	1.00[EUR][1000 genomes]
rs28374656	1.00[EUR][1000 genomes]
rs28376498	1.00[EUR][1000 genomes]
rs28380085	1.00[EUR][1000 genomes]
rs28421315	1.00[EUR][1000 genomes]
rs28445835	1.00[EUR][1000 genomes]
rs28477157	1.00[EUR][1000 genomes]
rs28507927	1.00[EUR][1000 genomes]
rs28568599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582808	1.00[EUR][1000 genomes]
rs28628081	1.00[EUR][1000 genomes]
rs28720008	1.00[EUR][1000 genomes]
rs35646935	1.00[EUR][1000 genomes]
rs6511012	1.00[EUR][1000 genomes]
rs7247645	1.00[EUR][1000 genomes]
rs7252085	1.00[EUR][1000 genomes]
rs7256152	1.00[EUR][1000 genomes]
rs8106189	1.00[EUR][1000 genomes]
rs9917000	1.00[EUR][1000 genomes]
rs9917034	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19176400-19215200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:19176400-19215800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr19:19176400-19215800	Weak transcription	NHLF	lung
4	chr19:19177200-19215400	Weak transcription	Colonic Mucosa	Colon
5	chr19:19180200-19216000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:19180400-19216400	Weak transcription	Colon Smooth Muscle	Colon
7	chr19:19180400-19219800	Weak transcription	HSMMtube	muscle
8	chr19:19180600-19213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:19180600-19245600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr19:19180600-19248400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:19185400-19221200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr19:19185600-19211400	Weak transcription	Pancreas	Pancrea
13	chr19:19186800-19215200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:19194200-19214000	Weak transcription	K562	blood
15	chr19:19194600-19229400	Weak transcription	Dnd41	blood
16	chr19:19194800-19211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:19194800-19215400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr19:19197400-19222600	Weak transcription	GM12878-XiMat	blood
19	chr19:19199000-19216200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr19:19200800-19215800	Weak transcription	Right Atrium	heart
21	chr19:19201000-19212400	Strong transcription	Primary T cells from cord blood	blood
22	chr19:19201800-19215400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr19:19201800-19215600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr19:19202000-19213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr19:19203000-19215600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr19:19203800-19245600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr19:19204800-19213800	Strong transcription	Fetal Stomach	stomach
28	chr19:19204800-19214200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:19205200-19216400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr19:19205400-19212800	Strong transcription	Fetal Muscle Leg	muscle
31	chr19:19205800-19216200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr19:19206400-19212600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr19:19206400-19214800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr19:19206600-19212200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr19:19206600-19212800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr19:19206600-19212800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr19:19206600-19212800	Strong transcription	Thymus	Thymus
38	chr19:19206600-19229600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr19:19206800-19211200	Weak transcription	Fetal Kidney	kidney
40	chr19:19206800-19211600	Strong transcription	Fetal Thymus	thymus
41	chr19:19206800-19212600	Strong transcription	Fetal Brain Female	brain
42	chr19:19206800-19212600	Strong transcription	Lung	lung
43	chr19:19206800-19213200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr19:19206800-19214000	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:19206800-19215400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:19207200-19212400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:19207200-19212400	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr19:19207200-19213000	Strong transcription	Spleen	Spleen
49	chr19:19207400-19211600	Weak transcription	Brain Substantia Nigra	brain
50	chr19:19207600-19215800	Weak transcription	Rectal Mucosa Donor 31	rectum

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