The 2.0 version of rSNPBase

Variant report

Variant rs10407980
Chromosome Location chr19:19181426-19181427
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19175400-19207800 Weak transcription Aorta Aorta
2 chr19:19176000-19184600 Weak transcription Spleen Spleen
3 chr19:19176200-19185800 Weak transcription Ovary ovary
4 chr19:19176200-19186000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr19:19176400-19182000 Weak transcription Small Intestine intestine
6 chr19:19176400-19183600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr19:19176400-19186200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr19:19176400-19189200 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr19:19176400-19190400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr19:19176400-19190600 Weak transcription Esophagus oesophagus
11 chr19:19176400-19192600 Weak transcription Muscle Satellite Cultured Cells --
12 chr19:19176400-19192600 Weak transcription Right Atrium heart
13 chr19:19176400-19215200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr19:19176400-19215800 Weak transcription Rectal Smooth Muscle rectum
15 chr19:19176400-19215800 Weak transcription NHLF lung
16 chr19:19176600-19181600 Weak transcription Thymus Thymus
17 chr19:19176600-19184800 Weak transcription Duodenum Mucosa Duodenum
18 chr19:19176600-19185000 Weak transcription Primary hematopoietic stem cells blood
19 chr19:19176600-19185000 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr19:19176600-19185000 Weak transcription Fetal Brain Male brain
21 chr19:19176600-19186800 Weak transcription Dnd41 blood
22 chr19:19176600-19187200 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr19:19176600-19187400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr19:19176600-19188400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr19:19176600-19190200 Weak transcription Fetal Kidney kidney
26 chr19:19176600-19194400 Weak transcription Placenta Amnion Placenta Amnion
27 chr19:19176600-19206800 Weak transcription Fetal Brain Female brain
28 chr19:19176600-19207200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr19:19176600-19208200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr19:19177000-19185400 Weak transcription Stomach Smooth Muscle stomach
31 chr19:19177000-19210000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr19:19177200-19204800 Weak transcription Fetal Intestine Large intestine
33 chr19:19177200-19215400 Weak transcription Colonic Mucosa Colon
34 chr19:19178200-19187400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr19:19178400-19204800 Weak transcription HepG2 liver
36 chr19:19178600-19183800 Weak transcription Brain Hippocampus Middle brain
37 chr19:19178600-19198400 Weak transcription Brain Substantia Nigra brain
38 chr19:19179400-19183800 Weak transcription Gastric stomach
39 chr19:19180200-19184800 Weak transcription Brain Germinal Matrix brain
40 chr19:19180200-19216000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr19:19180400-19181600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr19:19180400-19181800 Enhancers Skeletal Muscle Male skeletal muscle
43 chr19:19180400-19182000 Weak transcription Fetal Thymus thymus
44 chr19:19180400-19183800 Weak transcription Lung lung
45 chr19:19180400-19184000 Weak transcription Primary T cells from cord blood blood
46 chr19:19180400-19185000 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr19:19180400-19186000 Weak transcription Brain Anterior Caudate brain
48 chr19:19180400-19186200 Weak transcription Fetal Muscle Trunk muscle
49 chr19:19180400-19187200 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr19:19180400-19187600 Weak transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015