Variant report

Variant	rs10422226
Chromosome Location	chr19:41915292-41915293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr19:41915225-41915468	HepG2	liver:	n/a	n/a
2	FOSL1	chr19:41915255-41915510	K562	blood:	n/a	chr19:41915393-41915404
3	JUN	chr19:41915032-41915775	K562	blood:	n/a	n/a
4	FOXA1	chr19:41915111-41915587	HepG2	liver:	n/a	n/a
5	TEAD4	chr19:41915086-41915652	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr19:41915145-41915681	HepG2	liver:	n/a	n/a
7	JUND	chr19:41915047-41915644	MCF-7	breast:	n/a	chr19:41915393-41915404
8	FOSL1	chr19:41915085-41915652	HCT-116	colon:	n/a	chr19:41915393-41915404
9	FOS	chr19:41915240-41915588	MCF10A-Er-Src	breast:	n/a	chr19:41915393-41915404
10	MYBL2	chr19:41915198-41915646	HepG2	liver:	n/a	n/a
11	MAFK	chr19:41915263-41915376	HepG2	liver:	n/a	n/a
12	FOXA1	chr19:41915266-41915467	T-47D	breast:	n/a	n/a
13	JUND	chr19:41915166-41915585	HepG2	liver:	n/a	chr19:41915393-41915404
14	FOS	chr19:41915232-41915581	MCF10A-Er-Src	breast:	n/a	chr19:41915393-41915404
15	USF1	chr19:41915117-41915560	ECC-1	luminal epithelium:	n/a	n/a
16	FOSL2	chr19:41915108-41915634	HepG2	liver:	n/a	chr19:41915392-41915403
17	JUN	chr19:41915201-41915535	K562	blood:	n/a	n/a
18	JUN	chr19:41915282-41915570	K562	blood:	n/a	n/a
19	JUND	chr19:41915209-41915595	K562	blood:	n/a	chr19:41915393-41915404
20	TEAD4	chr19:41915172-41915563	K562	blood:	n/a	n/a
21	POLR2A	chr19:41915020-41916324	HL-60	blood:	n/a	n/a
22	FOSL1	chr19:41915158-41915469	K562	blood:	n/a	chr19:41915393-41915404
23	JUND	chr19:41915268-41915495	H1-hESC	embryonic stem cell:	n/a	chr19:41915393-41915404
24	POLR2A	chr19:41915140-41915571	ECC-1	luminal epithelium:	n/a	n/a
25	JUND	chr19:41915131-41915595	A549	lung:	n/a	chr19:41915393-41915404
26	JUND	chr19:41915156-41915608	HepG2	liver:	n/a	chr19:41915393-41915404
27	USF1	chr19:41915187-41915596	ECC-1	luminal epithelium:	n/a	n/a
28	FOS	chr19:41915230-41915567	MCF10A-Er-Src	breast:	n/a	chr19:41915393-41915404
29	TBP	chr19:41915283-41915601	HepG2	liver:	n/a	n/a
30	TEAD4	chr19:41915101-41915627	HepG2	liver:	n/a	n/a
31	USF1	chr19:41915254-41915431	HepG2	liver:	n/a	n/a
32	POLR2A	chr19:41915186-41915570	ECC-1	luminal epithelium:	n/a	n/a
33	FOS	chr19:41915247-41915587	HUVEC	blood vessel:	n/a	chr19:41915393-41915404
34	MYC	chr19:41915276-41915654	MCF10A-Er-Src	breast:	n/a	n/a
35	HEY1	chr19:41915278-41915691	HepG2	liver:	n/a	n/a
36	FOSL2	chr19:41915091-41915741	A549	lung:	n/a	chr19:41915392-41915403
37	MYC	chr19:41915285-41915698	MCF10A-Er-Src	breast:	n/a	n/a
38	JUN	chr19:41915238-41915552	HepG2	liver:	n/a	n/a
39	FOXA1	chr19:41915156-41915563	HepG2	liver:	n/a	n/a
40	USF2	chr19:41915291-41915445	HepG2	liver:	n/a	n/a
41	FOSL2	chr19:41915156-41915702	MCF-7	breast:	n/a	chr19:41915392-41915403
42	FOXA2	chr19:41915198-41915569	HepG2	liver:	n/a	n/a
43	FOS	chr19:41915231-41915588	MCF10A-Er-Src	breast:	n/a	chr19:41915393-41915404
44	USF1	chr19:41915281-41915482	K562	blood:	n/a	n/a
45	POLR2A	chr19:41914791-41915898	HepG2	liver:	n/a	n/a
46	JUND	chr19:41915235-41915469	HepG2	liver:	n/a	chr19:41915393-41915404
47	FOSL2	chr19:41915054-41915653	HepG2	liver:	n/a	chr19:41915392-41915403
48	ARID3A	chr19:41915283-41915580	HepG2	liver:	n/a	n/a
49	USF2	chr19:41915262-41915500	Hela-S3	cervix:	n/a	n/a
50	FOSL2	chr19:41915096-41915665	MCF-7	breast:	n/a	chr19:41915392-41915403

No.	Distal block	Cell Line	Cell type
1	chr19:41907449..41909771-chr19:41911047..41915349,5	K562	blood:
2	chr19:41911962..41915322-chr19:41916825..41920523,3	K562	blood:
3	chr19:41906917..41909746-chr19:41913485..41915349,3	K562	blood:
4	chr19:41902142..41905584-chr19:41912972..41915457,5	MCF-7	breast:
5	chr19:41899828..41905293-chr19:41906916..41917787,16	MCF-7	breast:
6	chr19:41913241..41916784-chr19:41931234..41935699,5	MCF-7	breast:
7	chr19:41913001..41915565-chr19:41918235..41920074,2	K562	blood:

Variant related genes	Relation type
BCKDHA	TF binding region
ENSG00000268475	Chromatin interaction
ENSG00000268987	Chromatin interaction
ENSG00000177191	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000248098	Chromatin interaction

rs_ID	r²[population]
rs10425437	1.00[EUR][1000 genomes]
rs59991538	0.89[AMR][1000 genomes]
rs7258787	0.89[AMR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41904600-41924800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:41905000-41916000	Weak transcription	Gastric	stomach
3	chr19:41905000-41916400	Weak transcription	Brain Germinal Matrix	brain
4	chr19:41905000-41916600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:41905000-41916600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:41905000-41924800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr19:41905000-41930800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr19:41905200-41916000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr19:41905200-41916000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr19:41905200-41916600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:41905200-41916600	Weak transcription	Fetal Thymus	thymus
12	chr19:41905200-41916800	Weak transcription	Aorta	Aorta
13	chr19:41905200-41916800	Weak transcription	Ovary	ovary
14	chr19:41905200-41917000	Weak transcription	Colonic Mucosa	Colon
15	chr19:41905200-41917200	Weak transcription	Fetal Lung	lung
16	chr19:41905200-41917400	Weak transcription	Brain Substantia Nigra	brain
17	chr19:41905200-41917600	Weak transcription	HSMMtube	muscle
18	chr19:41905200-41926600	Weak transcription	Small Intestine	intestine
19	chr19:41905400-41916400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr19:41905400-41916600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:41905400-41917000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr19:41906000-41916600	Weak transcription	Dnd41	blood
23	chr19:41907600-41915400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:41908200-41916600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr19:41909200-41915800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr19:41909600-41916400	Weak transcription	Fetal Brain Female	brain
27	chr19:41909800-41915400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr19:41909800-41916400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr19:41909800-41916600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr19:41909800-41916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr19:41910000-41915800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr19:41911000-41916600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr19:41911000-41916800	Enhancers	Adipose Nuclei	Adipose
34	chr19:41912200-41916000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:41912600-41916400	Enhancers	Primary hematopoietic stem cells	blood
36	chr19:41912800-41915600	Enhancers	Liver	Liver
37	chr19:41912800-41916400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr19:41912800-41916400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:41913000-41916000	Enhancers	Placenta	Placenta
40	chr19:41913000-41916400	Enhancers	Left Ventricle	heart
41	chr19:41913200-41916400	Enhancers	GM12878-XiMat	blood
42	chr19:41913600-41915600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr19:41913600-41917200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:41913600-41925800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr19:41913800-41915800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr19:41913800-41916000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr19:41913800-41916000	Weak transcription	Spleen	Spleen
48	chr19:41913800-41916400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:41913800-41916400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr19:41913800-41916400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links