Variant report

Variant	rs59991538
Chromosome Location	chr19:41920556-41920557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41917692..41920581-chr19:41927683..41929830,2	K562	blood:
2	chr19:41917692..41924780-chr19:41925842..41930089,8	K562	blood:
3	chr19:41903201..41905318-chr19:41918567..41921516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248098	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000268987	Chromatin interaction

rs_ID	r²[population]
rs10422226	0.89[AMR][1000 genomes]
rs2231944	0.89[AMR][1000 genomes]
rs34492894	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs45623740	0.89[AMR][1000 genomes]
rs58436091	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7258787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7259208	0.81[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41904600-41924800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:41905000-41924800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr19:41905000-41930800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:41905200-41926600	Weak transcription	Small Intestine	intestine
5	chr19:41913600-41925800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr19:41913800-41921000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:41913800-41927000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:41913800-41932600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr19:41915200-41932600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr19:41915400-41932800	Weak transcription	Hela-S3	cervix
11	chr19:41915600-41932800	Weak transcription	NH-A	brain
12	chr19:41916000-41924200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr19:41916000-41932000	Strong transcription	Fetal Stomach	stomach
14	chr19:41916000-41932400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:41916200-41921600	Strong transcription	NHLF	lung
16	chr19:41916200-41922200	Weak transcription	Osteobl	bone
17	chr19:41916200-41926200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:41916200-41927000	Strong transcription	Placenta	Placenta
19	chr19:41916200-41928000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:41916200-41932000	Weak transcription	HUVEC	blood vessel
21	chr19:41916400-41920800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr19:41916400-41921200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:41916400-41922800	Weak transcription	Fetal Kidney	kidney
24	chr19:41916400-41925000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr19:41916400-41925200	Strong transcription	Liver	Liver
26	chr19:41916400-41928400	Weak transcription	K562	blood
27	chr19:41916400-41930800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr19:41916400-41931600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:41916400-41932000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr19:41916400-41932600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr19:41916400-41932800	Strong transcription	Brain Germinal Matrix	brain
32	chr19:41916400-41932800	Strong transcription	Fetal Brain Female	brain
33	chr19:41916400-41933000	Strong transcription	Thymus	Thymus
34	chr19:41916600-41921200	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr19:41916600-41922400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr19:41916600-41923400	Strong transcription	Dnd41	blood
37	chr19:41916600-41925200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr19:41916600-41925600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:41916600-41926800	Strong transcription	Fetal Thymus	thymus
40	chr19:41916600-41929600	Strong transcription	Colon Smooth Muscle	Colon
41	chr19:41916600-41930200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr19:41916600-41930800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:41916600-41931200	Strong transcription	Rectal Smooth Muscle	rectum
44	chr19:41916600-41931400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr19:41916800-41922600	Strong transcription	Aorta	Aorta
46	chr19:41916800-41923600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:41916800-41925600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr19:41916800-41925800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr19:41916800-41926000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr19:41916800-41926600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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