Variant report

Variant	rs58436091
Chromosome Location	chr19:41913218-41913219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:41913199-41913801	HL-60	blood:	n/a	n/a
2	POLR2A	chr19:41913203-41913706	GM12891	blood:	n/a	n/a
3	TEAD4	chr19:41913200-41913441	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr19:41913144-41913844	HL-60	blood:	n/a	n/a
5	POLR2A	chr19:41913217-41913346	HepG2	liver:	n/a	n/a
6	POLR2A	chr19:41913161-41913807	GM12878	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41907449..41909771-chr19:41911047..41915349,5	K562	blood:
2	chr19:41911962..41915322-chr19:41916825..41920523,3	K562	blood:
3	chr19:41902416..41905268-chr19:41911881..41914442,2	K562	blood:
4	chr19:41902142..41905584-chr19:41912972..41915457,5	MCF-7	breast:
5	chr19:41908497..41910431-chr19:41912449..41914274,2	MCF-7	breast:
6	chr19:41899828..41905293-chr19:41906916..41917787,16	MCF-7	breast:
7	chr19:41913021..41914874-chr19:41916142..41918074,2	MCF-7	breast:
8	chr19:41907449..41909771-chr19:41910528..41913301,3	K562	blood:
9	chr19:41911350..41913622-chr19:41933867..41936504,2	K562	blood:
10	chr19:41913001..41915565-chr19:41918235..41920074,2	K562	blood:

No data

Variant related genes	Relation type
BCKDHA	TF binding region
ENSG00000177191	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000248098	Chromatin interaction
ENSG00000268987	Chromatin interaction

rs_ID	r²[population]
rs59991538	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7258787	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7259208	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41904200-41913400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr19:41904600-41924800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:41904800-41914800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:41905000-41915200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr19:41905000-41916000	Weak transcription	Gastric	stomach
6	chr19:41905000-41916400	Weak transcription	Brain Germinal Matrix	brain
7	chr19:41905000-41916600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr19:41905000-41916600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr19:41905000-41924800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:41905000-41930800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:41905200-41913400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:41905200-41913400	Weak transcription	NH-A	brain
13	chr19:41905200-41914200	Weak transcription	Colon Smooth Muscle	Colon
14	chr19:41905200-41914400	Weak transcription	Psoas Muscle	Psoas
15	chr19:41905200-41914800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr19:41905200-41914800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr19:41905200-41915000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr19:41905200-41915000	Weak transcription	HMEC	breast
19	chr19:41905200-41915200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr19:41905200-41915200	Weak transcription	HSMM	muscle
21	chr19:41905200-41915200	Weak transcription	NHEK	skin
22	chr19:41905200-41915200	Weak transcription	Osteobl	bone
23	chr19:41905200-41916000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr19:41905200-41916000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr19:41905200-41916600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:41905200-41916600	Weak transcription	Fetal Thymus	thymus
27	chr19:41905200-41916800	Weak transcription	Aorta	Aorta
28	chr19:41905200-41916800	Weak transcription	Ovary	ovary
29	chr19:41905200-41917000	Weak transcription	Colonic Mucosa	Colon
30	chr19:41905200-41917200	Weak transcription	Fetal Lung	lung
31	chr19:41905200-41917400	Weak transcription	Brain Substantia Nigra	brain
32	chr19:41905200-41917600	Weak transcription	HSMMtube	muscle
33	chr19:41905200-41926600	Weak transcription	Small Intestine	intestine
34	chr19:41905400-41914200	Weak transcription	HepG2	liver
35	chr19:41905400-41915200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:41905400-41915200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr19:41905400-41915200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:41905400-41915200	Weak transcription	A549	lung
39	chr19:41905400-41916400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr19:41905400-41916600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr19:41905400-41917000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr19:41906000-41916600	Weak transcription	Dnd41	blood
43	chr19:41907600-41915400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr19:41907800-41915200	Weak transcription	NHLF	lung
45	chr19:41908200-41916600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr19:41909200-41915800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr19:41909400-41914200	Weak transcription	Fetal Intestine Large	intestine
48	chr19:41909400-41915200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr19:41909600-41914800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr19:41909600-41914800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links