Variant report

Variant	rs10422331
Chromosome Location	chr19:19380356-19380357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000187664	Chromatin interaction
ENSG00000130287	Chromatin interaction
ENSG00000213996	Chromatin interaction
ENSG00000267629	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10402799	0.82[AFR][1000 genomes]
rs10408216	0.84[AFR][1000 genomes]
rs10413309	0.82[AFR][1000 genomes]
rs10417715	0.86[AFR][1000 genomes]
rs10422620	1.00[AFR][1000 genomes]
rs10423747	0.86[AFR][1000 genomes]
rs12327663	0.86[AFR][1000 genomes]
rs13344498	0.83[AFR][1000 genomes]
rs16996031	0.86[AFR][1000 genomes]
rs28437425	0.90[AFR][1000 genomes]
rs28857503	0.90[AFR][1000 genomes]
rs55877107	0.96[AFR][1000 genomes]
rs56304704	0.82[AFR][1000 genomes]
rs56317107	0.82[AFR][1000 genomes]
rs57002012	0.83[AFR][1000 genomes]
rs60860168	0.82[AFR][1000 genomes]
rs73922864	0.82[AFR][1000 genomes]
rs73922870	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19373000-19384000	Weak transcription	Pancreas	Pancrea
2	chr19:19374000-19383400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:19374000-19383400	Weak transcription	Right Atrium	heart
4	chr19:19374200-19383600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:19374400-19381400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr19:19374400-19383200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr19:19374800-19381800	Strong transcription	Fetal Intestine Small	intestine
8	chr19:19374800-19383200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:19377400-19380400	Weak transcription	Fetal Stomach	stomach
10	chr19:19377600-19380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:19377800-19381800	Weak transcription	Fetal Intestine Large	intestine
12	chr19:19380200-19380400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:19380200-19382600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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