Variant report

Variant	rs10422620
Chromosome Location	chr19:19380656-19380657
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19336338..19339154-chr19:19378323..19380714,2	K562	blood:
2	chr19:19379140..19381298-chr19:19384434..19386732,2	K562	blood:
3	chr19:19375808..19378765-chr19:19380089..19382167,3	K562	blood:
4	chr19:19371179..19375166-chr19:19377084..19380673,3	K562	blood:
5	chr19:19374128..19376226-chr19:19377973..19380781,2	MCF-7	breast:
6	chr19:19378854..19381298-chr19:19383968..19386732,3	K562	blood:
7	chr19:19378511..19382101-chr19:19389076..19392249,3	K562	blood:

Variant related genes	Relation type
ENSG00000267629	Chromatin interaction
ENSG00000213996	Chromatin interaction
ENSG00000187664	Chromatin interaction
ENSG00000130287	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10402729	0.87[AMR][1000 genomes]
rs10402799	0.82[AFR][1000 genomes]
rs10408216	0.84[AFR][1000 genomes]
rs10413309	0.82[AFR][1000 genomes]
rs10413995	0.87[AMR][1000 genomes]
rs10414990	0.87[AMR][1000 genomes]
rs10416520	0.87[AMR][1000 genomes]
rs10417330	0.87[AMR][1000 genomes]
rs10417715	0.86[AFR][1000 genomes]
rs10422331	1.00[AFR][1000 genomes]
rs10423747	0.86[AFR][1000 genomes]
rs10425084	0.87[AMR][1000 genomes]
rs12327663	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13344498	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16996031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28437425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28857503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55877107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56304704	0.82[AFR][1000 genomes]
rs56317107	0.82[AFR][1000 genomes]
rs57002012	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58409825	0.87[AMR][1000 genomes]
rs60860168	0.82[AFR][1000 genomes]
rs73922864	0.82[AFR][1000 genomes]
rs73922870	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19373000-19384000	Weak transcription	Pancreas	Pancrea
2	chr19:19374000-19383400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:19374000-19383400	Weak transcription	Right Atrium	heart
4	chr19:19374200-19383600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:19374400-19381400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr19:19374400-19383200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr19:19374800-19381800	Strong transcription	Fetal Intestine Small	intestine
8	chr19:19374800-19383200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:19377600-19380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:19377800-19381800	Weak transcription	Fetal Intestine Large	intestine
11	chr19:19380200-19382600	Weak transcription	Liver	Liver
12	chr19:19380400-19381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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