Variant report

Variant	rs10425938
Chromosome Location	chr19:45605568-45605569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45603847..45605776-chr19:45612544..45615012,2	K562	blood:
2	chr19:45580658..45583147-chr19:45605476..45608233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142252	Chromatin interaction
ENSG00000007047	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58880456	0.83[AMR][1000 genomes]
rs7259404	1.00[AMR][1000 genomes]
rs8111966	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449420	chr19:45523560-45626884	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv912142	chr19:45570051-45708758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv833842	chr19:45593888-45684308	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv833843	chr19:45593888-45793682	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45597400-45609400	Enhancers	Stomach Mucosa	stomach
2	chr19:45597600-45606200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:45597600-45609200	Enhancers	Pancreas	Pancrea
4	chr19:45598200-45606000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr19:45598400-45605600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:45598400-45606000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr19:45598400-45606000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr19:45598400-45606000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:45598400-45606600	Genic enhancers	Fetal Intestine Small	intestine
10	chr19:45599400-45605800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr19:45599800-45605800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:45600000-45606200	Enhancers	Fetal Intestine Large	intestine
13	chr19:45600000-45607800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:45600800-45607800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:45601400-45606200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr19:45601400-45608000	Enhancers	Esophagus	oesophagus
17	chr19:45601400-45608000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr19:45601600-45605600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:45601600-45605800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:45601600-45605800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr19:45601600-45606400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:45602000-45605600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr19:45602000-45606200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr19:45602000-45606200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr19:45602000-45612200	Weak transcription	Hela-S3	cervix
26	chr19:45602200-45605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr19:45602200-45606400	Weak transcription	Colon Smooth Muscle	Colon
28	chr19:45602400-45607200	Enhancers	NHLF	lung
29	chr19:45602400-45607600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr19:45602600-45606200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr19:45602600-45606200	Weak transcription	Fetal Lung	lung
32	chr19:45602600-45606200	Weak transcription	Ovary	ovary
33	chr19:45602600-45606400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:45602800-45605600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr19:45602800-45605800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr19:45602800-45605800	Weak transcription	Liver	Liver
37	chr19:45602800-45606200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr19:45602800-45612600	Weak transcription	A549	lung
39	chr19:45603000-45605800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr19:45603000-45606000	Weak transcription	Fetal Brain Male	brain
41	chr19:45603400-45605800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr19:45603400-45606000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr19:45603400-45606200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr19:45603400-45609200	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr19:45603600-45606000	Weak transcription	Fetal Heart	heart
46	chr19:45603600-45606000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr19:45603600-45606400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr19:45603600-45606400	Enhancers	Fetal Thymus	thymus
49	chr19:45603600-45607600	Enhancers	Duodenum Mucosa	Duodenum
50	chr19:45603600-45609200	Enhancers	Skeletal Muscle Female	skeletal muscle

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