Variant report

Variant	rs10426620
Chromosome Location	chr19:51566873-51566874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10500306	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs11665682	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[ASN][1000 genomes]
rs2736431	0.87[ASN][1000 genomes]
rs2736433	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524556	chr19:51565975-51572068	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51555800-51567800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51559800-51567800	Weak transcription	HMEC	breast
3	chr19:51565800-51568800	Enhancers	Pancreas	Pancrea
4	chr19:51566800-51567000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr19:51566800-51567200	Enhancers	Esophagus	oesophagus
6	chr19:51566800-51567400	Enhancers	Gastric	stomach
7	chr19:51566800-51567400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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