Variant report

Variant	rs10500306
Chromosome Location	chr19:51567990-51567991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51529957..51532626-chr19:51566053..51568758,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167757	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10426620	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs11665682	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12979090	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736431	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2736433	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2736434	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524556	chr19:51565975-51572068	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv819004	chr19:51566937-51569403	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51565800-51568800	Enhancers	Pancreas	Pancrea
2	chr19:51567000-51568000	Enhancers	Stomach Mucosa	stomach
3	chr19:51567200-51568600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:51567800-51568000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr19:51567800-51568000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
6	chr19:51567800-51568000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:51567800-51568000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
8	chr19:51567800-51568000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:51567800-51568000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:51567800-51568000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:51567800-51568000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr19:51567800-51568000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:51567800-51568000	Flanking Active TSS	Esophagus	oesophagus
14	chr19:51567800-51568000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr19:51567800-51568000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr19:51567800-51568000	Enhancers	Ovary	ovary
17	chr19:51567800-51568000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
18	chr19:51567800-51568000	Enhancers	HMEC	breast
19	chr19:51567800-51568000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
20	chr19:51567800-51568200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:51567800-51568200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr19:51567800-51568200	Flanking Active TSS	K562	blood
23	chr19:51567800-51568400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:51567800-51568400	Active TSS	Right Atrium	heart
25	chr19:51567800-51568400	Bivalent/Poised TSS	NHEK	skin
26	chr19:51567800-51568600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr19:51567800-51568600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
28	chr19:51567800-51568800	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr19:51567800-51568800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:51567800-51568800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:51567800-51568800	Active TSS	A549	lung
32	chr19:51567800-51569000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr19:51567800-51569000	Active TSS	H9 Cell Line	embryonic stem cell
34	chr19:51567800-51569000	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr19:51567800-51569000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr19:51567800-51569000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:51567800-51569000	Enhancers	Gastric	stomach
38	chr19:51567800-51569200	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr19:51567800-51569200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr19:51567800-51569200	Enhancers	Right Ventricle	heart

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