Variant report

Variant	rs1042800
Chromosome Location	chr6:119500208-119500209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119492255..119493847-chr6:119498446..119501102,2	K562	blood:
2	chr6:119486235..119488127-chr6:119499156..119501028,2	K562	blood:
3	chr6:119495135..119497259-chr6:119500110..119502999,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11970485	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17626313	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3756943	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4140634	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56017391	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56690049	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs760784	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886571	chr6:119494199-119517239	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119491800-119500400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:119491800-119501000	Weak transcription	Fetal Intestine Large	intestine
3	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:119492000-119507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:119492200-119505400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:119492200-119527800	Weak transcription	NHEK	skin
7	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
8	chr6:119492600-119500400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:119492600-119505600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:119493400-119500400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:119493600-119518000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood
13	chr6:119494400-119501000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
15	chr6:119494800-119501000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:119494800-119505200	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:119494800-119526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:119495000-119500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:119495000-119506000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:119495200-119507200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:119495200-119507400	Weak transcription	Pancreas	Pancrea
22	chr6:119495400-119522000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:119495600-119522200	Weak transcription	Fetal Kidney	kidney
24	chr6:119496600-119500400	Weak transcription	Primary B cells from cord blood	blood
25	chr6:119496600-119501200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:119496600-119507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:119497000-119512600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:119497000-119524000	Weak transcription	NHLF	lung
29	chr6:119497000-119524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:119497000-119524400	Weak transcription	Small Intestine	intestine
31	chr6:119497200-119501000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:119497200-119518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:119497400-119501000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:119497400-119502600	Weak transcription	NHDF-Ad	bronchial
35	chr6:119497400-119507600	Weak transcription	Aorta	Aorta
36	chr6:119497600-119500400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:119498000-119503800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:119498000-119504200	Strong transcription	Adipose Nuclei	Adipose
39	chr6:119498000-119504600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
41	chr6:119498200-119500400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:119498200-119500800	Weak transcription	Placenta	Placenta
43	chr6:119498200-119501000	Weak transcription	Fetal Lung	lung
44	chr6:119498200-119501600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:119498200-119506800	Weak transcription	Spleen	Spleen
46	chr6:119498200-119527400	Strong transcription	Liver	Liver
47	chr6:119498600-119508400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:119498600-119508600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:119498600-119517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:119498600-119531400	Strong transcription	HepG2	liver

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