Variant report

Variant	rs56690049
Chromosome Location	chr6:119496442-119496443
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119495135..119497259-chr6:119500110..119502999,2	MCF-7	breast:
2	chr6:119495580..119498090-chr6:119500296..119504744,4	K562	blood:
3	chr6:119494035..119497097-chr6:119497840..119499702,3	K562	blood:
4	chr6:119494532..119497105-chr6:119519039..119521692,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1042800	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11970485	0.82[EUR][1000 genomes]
rs17626313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4140634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56017391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs760784	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886571	chr6:119494199-119517239	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119484800-119499400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:119491800-119496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:119491800-119500400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:119491800-119501000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:119492000-119507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:119492200-119505400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:119492200-119527800	Weak transcription	NHEK	skin
9	chr6:119492400-119498200	Weak transcription	Liver	Liver
10	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
11	chr6:119492600-119498200	Enhancers	HepG2	liver
12	chr6:119492600-119498600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:119492600-119500400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:119492600-119505600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:119493400-119500400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:119493600-119518000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood
18	chr6:119494400-119501000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:119494600-119498600	Weak transcription	K562	blood
20	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
21	chr6:119494800-119496800	Weak transcription	NHDF-Ad	bronchial
22	chr6:119494800-119501000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:119494800-119505200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:119494800-119526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:119495000-119497000	Weak transcription	Adipose Nuclei	Adipose
26	chr6:119495000-119500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:119495000-119506000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:119495200-119499000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:119495200-119507200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:119495200-119507400	Weak transcription	Pancreas	Pancrea
31	chr6:119495400-119522000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:119495600-119496600	Weak transcription	Fetal Lung	lung
33	chr6:119495600-119522200	Weak transcription	Fetal Kidney	kidney
34	chr6:119495800-119497000	Weak transcription	Fetal Heart	heart
35	chr6:119496200-119498600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:119496400-119496600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:119496400-119496600	Enhancers	Fetal Muscle Trunk	muscle
38	chr6:119496400-119497000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:119496400-119497000	Enhancers	NHLF	lung
40	chr6:119496400-119497600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:119496400-119497800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:119496400-119497800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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