Variant report

Variant	rs10428429
Chromosome Location	chr4:94137378-94137379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11724865	1.00[EUR][1000 genomes]
rs11730324	1.00[EUR][1000 genomes]
rs11733088	1.00[EUR][1000 genomes]
rs17020215	1.00[EUR][1000 genomes]
rs17020224	1.00[EUR][1000 genomes]
rs28513308	1.00[EUR][1000 genomes]
rs35764687	1.00[EUR][1000 genomes]
rs57577000	1.00[EUR][1000 genomes]
rs59397055	1.00[EUR][1000 genomes]
rs6842934	1.00[EUR][1000 genomes]
rs72887677	1.00[EUR][1000 genomes]
rs72887689	1.00[EUR][1000 genomes]
rs72887690	1.00[EUR][1000 genomes]
rs72887694	1.00[EUR][1000 genomes]
rs72887698	1.00[EUR][1000 genomes]
rs72889607	1.00[EUR][1000 genomes]
rs72889639	1.00[EUR][1000 genomes]
rs72889671	1.00[EUR][1000 genomes]
rs7676452	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94121200-94145600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:94129000-94139400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:94136600-94148000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:94136800-94145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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