Variant report

Variant	rs59397055
Chromosome Location	chr4:94065054-94065055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011751	0.87[ASN][1000 genomes]
rs10428429	1.00[EUR][1000 genomes]
rs11724865	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11725186	0.95[ASN][1000 genomes]
rs11730324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11733088	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108474	0.92[ASN][1000 genomes]
rs13105522	0.95[ASN][1000 genomes]
rs17020215	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17020224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1847262	0.95[ASN][1000 genomes]
rs28513308	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34829716	0.95[ASN][1000 genomes]
rs35764687	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373126	0.95[ASN][1000 genomes]
rs56011292	0.95[ASN][1000 genomes]
rs57577000	1.00[EUR][1000 genomes]
rs58129862	0.81[ASN][1000 genomes]
rs62308200	0.95[ASN][1000 genomes]
rs62308201	0.90[ASN][1000 genomes]
rs62308202	0.95[ASN][1000 genomes]
rs62308204	0.95[ASN][1000 genomes]
rs62308207	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62308209	0.87[ASN][1000 genomes]
rs62308210	0.87[ASN][1000 genomes]
rs62308212	0.95[ASN][1000 genomes]
rs62308213	0.95[ASN][1000 genomes]
rs62308214	0.92[ASN][1000 genomes]
rs6842934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6849575	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72665250	0.95[ASN][1000 genomes]
rs72665251	0.95[ASN][1000 genomes]
rs72665274	0.95[ASN][1000 genomes]
rs72665276	0.95[ASN][1000 genomes]
rs72887677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887689	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72887690	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72887694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72887698	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72889607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72889639	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72889671	1.00[EUR][1000 genomes]
rs7676452	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002664	chr4:94045490-94107687	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3450455	chr4:94047592-94111856	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv461588	chr4:94049584-94106172	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594900	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv818254	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3335140	chr4:94051629-94067627	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3331917	chr4:94063161-94093647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94060200-94065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:94060200-94065400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:94060600-94065200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:94060800-94068600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:94064000-94065200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:94064000-94067200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:94064000-94067600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:94064400-94065400	Weak transcription	Fetal Brain Male	brain
9	chr4:94064400-94066600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:94064400-94069600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:94064600-94066400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:94065000-94065800	Enhancers	Cortex derived primary cultured neurospheres	brain

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