Variant report

Variant	rs56011292
Chromosome Location	chr4:93992760-93992761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10011751	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11724865	0.87[ASN][1000 genomes]
rs11725186	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11730324	0.89[ASN][1000 genomes]
rs11733088	0.87[ASN][1000 genomes]
rs11734429	0.90[EUR][1000 genomes]
rs12108474	0.97[ASN][1000 genomes]
rs13105522	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020195	0.90[EUR][1000 genomes]
rs17020224	0.82[ASN][1000 genomes]
rs1847262	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513308	0.82[ASN][1000 genomes]
rs34829716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35764687	0.87[ASN][1000 genomes]
rs4373126	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58129862	0.87[ASN][1000 genomes]
rs59397055	0.95[ASN][1000 genomes]
rs62308162	0.80[EUR][1000 genomes]
rs62308167	0.90[EUR][1000 genomes]
rs62308172	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62308200	1.00[ASN][1000 genomes]
rs62308201	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62308202	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308204	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62308207	1.00[ASN][1000 genomes]
rs62308209	0.92[ASN][1000 genomes]
rs62308210	0.92[ASN][1000 genomes]
rs62308212	1.00[ASN][1000 genomes]
rs62308213	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308214	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849575	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665250	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665251	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665274	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665276	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887689	0.87[ASN][1000 genomes]
rs72887690	0.87[ASN][1000 genomes]
rs72887694	0.87[ASN][1000 genomes]
rs72887698	0.82[ASN][1000 genomes]
rs72889607	0.82[ASN][1000 genomes]
rs72889639	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1797112	chr4:93974179-93993208	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93988400-94002000	Weak transcription	H1 Cell Line	embryonic stem cell

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